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The map label for this gene is yggB [C]

Identifier: 50086042

GI number: 50086042

Start: 2954952

End: 2955872

Strand: Direct

Name: yggB [C]

Synonym: ACIAD3026

Alternate gene names: 50086042

Gene position: 2954952-2955872 (Clockwise)

Preceding gene: 50086041

Following gene: 50086044

Centisome position: 82.11

GC content: 41.37

Gene sequence:

>921_bases
ATGGCAGATTCCAATATCCCTAAAGATGTCGCTGTCAGCCTTAAAGGGATTTTTACCAATATTAATCTGGATCGTCTAAG
TGAACTTCTGGTTGCACTGGTTCTATGTCTCATCGGATTTATTTTTGCGCGCTTGGTTTCAAATACATTCATACGCACAA
TTGGTCAACGCTTTAATGCTCACCAAAGAATGGTATGGCGTCGTGGTATTTTTTACTTTATTTTTTTGATCTTCGTGATG
GCGAGCCTCAAGGAAGCTGGATTTAAACTCAGCGTCTTTTTGGGTGCTGCAGGTATTTTAACCGTGGCTTTGGGCTTTGC
ATCACAAACCTCTGCCAGTAACCTGATTAGTGGTTTATTCCTGATTGGTGAAGGCTCTTTTGAGGTAGGTGATACCATTC
AAATTACGCTCATTCGCGGACACACCATTGAAGGTCAAGTCATTTCAATCGATTTACTCTCGGTTAAACTGCTTACCCTA
GATAATGTCTATGTGCGTTTACCCAATGAACAACTGATTCGTGCCCCTGTCATGAATATGTCTAAGTATCCGATTCGACG
TATTCCGATCACACTGGCAATCAACTTTCAGGAAGACATCATGAAAGTGCGAAAAGTATTGTTAGATGTCGCATCAAAAT
ATCCTATGGCACTGGATGACCCTAAGCCAGAAGTTACCGTGACTGCTTTTCGTGAATCATCAATTGAACTACTGTTTACT
GTTTGGTGTCGACAAGAGTTCTTTTTAAAATCTCGTGATGAACTCCAAGAACGCATTCGTAATGGCTTTTTGGAAAATCA
AATCGAAATTCCTGTTCCCAAAATGGGTTTTGTGGACCGCCCTGCCGTGAGCCCATTGACCAATGAAGAGATTGATCAAT
ATGCCAACGCAGAAGCAATCAAGCGTGAACCTAAAACTTAA

Upstream 100 bases:

>100_bases
GGACGCCGCCTCTGGCAGGCGAGGTGATTTATGTACATCCTCCTCGTTCTCCTGGGGGAGCACTTTTTAATATGTTTGAT
TCATTTTTCTAGGAAGCACT

Downstream 100 bases:

>100_bases
CCCCCATTAACTACAATATTCTTTAGGATGTGTCACCATACAACTGGGTGGCACACCCATCTCAATCGTATATTCCGATG
ATGAGACGGCAGAGGATGAA

Product: small conductance mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MADSNIPKDVAVSLKGIFTNINLDRLSELLVALVLCLIGFIFARLVSNTFIRTIGQRFNAHQRMVWRRGIFYFIFLIFVM
ASLKEAGFKLSVFLGAAGILTVALGFASQTSASNLISGLFLIGEGSFEVGDTIQITLIRGHTIEGQVISIDLLSVKLLTL
DNVYVRLPNEQLIRAPVMNMSKYPIRRIPITLAINFQEDIMKVRKVLLDVASKYPMALDDPKPEVTVTAFRESSIELLFT
VWCRQEFFLKSRDELQERIRNGFLENQIEIPVPKMGFVDRPAVSPLTNEEIDQYANAEAIKREPKT

Sequences:

>Translated_306_residues
MADSNIPKDVAVSLKGIFTNINLDRLSELLVALVLCLIGFIFARLVSNTFIRTIGQRFNAHQRMVWRRGIFYFIFLIFVM
ASLKEAGFKLSVFLGAAGILTVALGFASQTSASNLISGLFLIGEGSFEVGDTIQITLIRGHTIEGQVISIDLLSVKLLTL
DNVYVRLPNEQLIRAPVMNMSKYPIRRIPITLAINFQEDIMKVRKVLLDVASKYPMALDDPKPEVTVTAFRESSIELLFT
VWCRQEFFLKSRDELQERIRNGFLENQIEIPVPKMGFVDRPAVSPLTNEEIDQYANAEAIKREPKT
>Mature_305_residues
ADSNIPKDVAVSLKGIFTNINLDRLSELLVALVLCLIGFIFARLVSNTFIRTIGQRFNAHQRMVWRRGIFYFIFLIFVMA
SLKEAGFKLSVFLGAAGILTVALGFASQTSASNLISGLFLIGEGSFEVGDTIQITLIRGHTIEGQVISIDLLSVKLLTLD
NVYVRLPNEQLIRAPVMNMSKYPIRRIPITLAINFQEDIMKVRKVLLDVASKYPMALDDPKPEVTVTAFRESSIELLFTV
WCRQEFFLKSRDELQERIRNGFLENQIEIPVPKMGFVDRPAVSPLTNEEIDQYANAEAIKREPKT

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=249, Percent_Identity=25.3012048192771, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1786670, Length=207, Percent_Identity=29.951690821256, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 34502; Mature: 34371

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSNIPKDVAVSLKGIFTNINLDRLSELLVALVLCLIGFIFARLVSNTFIRTIGQRFNA
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
HQRMVWRRGIFYFIFLIFVMASLKEAGFKLSVFLGAAGILTVALGFASQTSASNLISGLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHEEE
LIGEGSFEVGDTIQITLIRGHTIEGQVISIDLLSVKLLTLDNVYVRLPNEQLIRAPVMNM
EEECCCCCCCCEEEEEEEECCEECCEEEEEEEEEEEEEEECCEEEECCCHHHHHHHHCCC
SKYPIRRIPITLAINFQEDIMKVRKVLLDVASKYPMALDDPKPEVTVTAFRESSIELLFT
CCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHH
VWCRQEFFLKSRDELQERIRNGFLENQIEIPVPKMGFVDRPAVSPLTNEEIDQYANAEAI
HHHHHHHHHCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
KREPKT
HCCCCC
>Mature Secondary Structure 
ADSNIPKDVAVSLKGIFTNINLDRLSELLVALVLCLIGFIFARLVSNTFIRTIGQRFNA
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
HQRMVWRRGIFYFIFLIFVMASLKEAGFKLSVFLGAAGILTVALGFASQTSASNLISGLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHEEE
LIGEGSFEVGDTIQITLIRGHTIEGQVISIDLLSVKLLTLDNVYVRLPNEQLIRAPVMNM
EEECCCCCCCCEEEEEEEECCEECCEEEEEEEEEEEEEEECCEEEECCCHHHHHHHHCCC
SKYPIRRIPITLAINFQEDIMKVRKVLLDVASKYPMALDDPKPEVTVTAFRESSIELLFT
CCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHH
VWCRQEFFLKSRDELQERIRNGFLENQIEIPVPKMGFVDRPAVSPLTNEEIDQYANAEAI
HHHHHHHHHCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
KREPKT
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]