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The map label for this gene is ypfJ [H]

Identifier: 50085909

GI number: 50085909

Start: 2809069

End: 2809965

Strand: Reverse

Name: ypfJ [H]

Synonym: ACIAD2869

Alternate gene names: 50085909

Gene position: 2809965-2809069 (Counterclockwise)

Preceding gene: 50085910

Following gene: 50085907

Centisome position: 78.08

GC content: 43.26

Gene sequence:

>897_bases
ATGCGTTGGAAAGGGCGTCGTGTTAGTAGTAACGTAGAAGATCGTCGTGGGAGTGGTGCAAAGGTTGGTGGCATCAGTAT
TATTGGATTAGTTGTTGCTTTTGTTGCATGGAAATTTTTCGGTGTTGATCCGCAGCAAGCCTATCAAGCAACACAGCAAA
TCACGGCTGCACAAAATCCATCTTCAAATGCGCCACAGCAACTCACTGCAGATCAAAAAGAAGCATCTGATTTTGTGGGA
ACCATTTTAGCGGATACAGAAGATACTTGGACACCCATTTTTAAGCAGTTGGGTCAAACTTATGTGCCGCCAAAGTTGGT
ACTATTTAATGGTATTGTGCAATCTGGTTGTGGAACAGCACAATCTGCCATGGGGCCATTTTATTGTCCCACAGATCAAA
AAGTATATATCGATACCAGCTTCTTTAAAGATATGCGTGAGCAAATGGGAATCTCTGGTGAACAGAATCAGACTGAACTT
TCGCGACAGGATCAAGCTGGTGACTTTGCTCAAGCATATGTGGTGGCACATGAGGTAGGGCACCATATTCAGAATCTGCT
AGGAATATCTTCTCAAGTGCAACAGGCACAAGCGCAAGGTAGTCGTGCTCAAGCCAATCAACTTTCAGTTCGTCTTGAAT
TGCAAGCAGATTGCTTTGCTGGAATATGGGCCAATCATAATCAGCAACGAACACAATTTTTAGAGGCAGGTGATATTGAA
GAAGCAATGGATGCTGCACAAAAAATTGGCGATGACTACTTACAAAAACGTTCTACTGGACAAGTGGTACCAGATAGTTT
TACTCATGGCACCAGTCAGCAACGCATGCATTGGTTTGAGGTGGGTCTAAAATCGGGTGATTTAAATCAGTGTGATACCT
TCAAGGCCAGTATTTGA

Upstream 100 bases:

>100_bases
ACTTGTTGCTGGTGCAATTGTTCTAATATTGGTGACTTTATTTCAAAAAATGAGATCAAAATAGTCATAATTGTATGATA
AAAATAATCTGAGGTGTTTT

Downstream 100 bases:

>100_bases
CAAGAGAAGGTTATGCCTTCTCTTTTATTTTTCTAAGAATCTTCTAAAATTACGTATAATTCTGAAACTGCAATAAATGG
CAATTAAAGCAAAGATTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MRWKGRRVSSNVEDRRGSGAKVGGISIIGLVVAFVAWKFFGVDPQQAYQATQQITAAQNPSSNAPQQLTADQKEASDFVG
TILADTEDTWTPIFKQLGQTYVPPKLVLFNGIVQSGCGTAQSAMGPFYCPTDQKVYIDTSFFKDMREQMGISGEQNQTEL
SRQDQAGDFAQAYVVAHEVGHHIQNLLGISSQVQQAQAQGSRAQANQLSVRLELQADCFAGIWANHNQQRTQFLEAGDIE
EAMDAAQKIGDDYLQKRSTGQVVPDSFTHGTSQQRMHWFEVGLKSGDLNQCDTFKASI

Sequences:

>Translated_298_residues
MRWKGRRVSSNVEDRRGSGAKVGGISIIGLVVAFVAWKFFGVDPQQAYQATQQITAAQNPSSNAPQQLTADQKEASDFVG
TILADTEDTWTPIFKQLGQTYVPPKLVLFNGIVQSGCGTAQSAMGPFYCPTDQKVYIDTSFFKDMREQMGISGEQNQTEL
SRQDQAGDFAQAYVVAHEVGHHIQNLLGISSQVQQAQAQGSRAQANQLSVRLELQADCFAGIWANHNQQRTQFLEAGDIE
EAMDAAQKIGDDYLQKRSTGQVVPDSFTHGTSQQRMHWFEVGLKSGDLNQCDTFKASI
>Mature_298_residues
MRWKGRRVSSNVEDRRGSGAKVGGISIIGLVVAFVAWKFFGVDPQQAYQATQQITAAQNPSSNAPQQLTADQKEASDFVG
TILADTEDTWTPIFKQLGQTYVPPKLVLFNGIVQSGCGTAQSAMGPFYCPTDQKVYIDTSFFKDMREQMGISGEQNQTEL
SRQDQAGDFAQAYVVAHEVGHHIQNLLGISSQVQQAQAQGSRAQANQLSVRLELQADCFAGIWANHNQQRTQFLEAGDIE
EAMDAAQKIGDDYLQKRSTGQVVPDSFTHGTSQQRMHWFEVGLKSGDLNQCDTFKASI

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=309, Percent_Identity=49.5145631067961, Blast_Score=291, Evalue=3e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 32774; Mature: 32774

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWKGRRVSSNVEDRRGSGAKVGGISIIGLVVAFVAWKFFGVDPQQAYQATQQITAAQNP
CCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SSNAPQQLTADQKEASDFVGTILADTEDTWTPIFKQLGQTYVPPKLVLFNGIVQSGCGTA
CCCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCH
QSAMGPFYCPTDQKVYIDTSFFKDMREQMGISGEQNQTELSRQDQAGDFAQAYVVAHEVG
HHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
HHIQNLLGISSQVQQAQAQGSRAQANQLSVRLELQADCFAGIWANHNQQRTQFLEAGDIE
HHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEEECCCHHHHHHCCCCHHHHHHHHCCCHH
EAMDAAQKIGDDYLQKRSTGQVVPDSFTHGTSQQRMHWFEVGLKSGDLNQCDTFKASI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MRWKGRRVSSNVEDRRGSGAKVGGISIIGLVVAFVAWKFFGVDPQQAYQATQQITAAQNP
CCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SSNAPQQLTADQKEASDFVGTILADTEDTWTPIFKQLGQTYVPPKLVLFNGIVQSGCGTA
CCCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCH
QSAMGPFYCPTDQKVYIDTSFFKDMREQMGISGEQNQTELSRQDQAGDFAQAYVVAHEVG
HHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
HHIQNLLGISSQVQQAQAQGSRAQANQLSVRLELQADCFAGIWANHNQQRTQFLEAGDIE
HHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEEECCCHHHHHHCCCCHHHHHHHHCCCHH
EAMDAAQKIGDDYLQKRSTGQVVPDSFTHGTSQQRMHWFEVGLKSGDLNQCDTFKASI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]