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The map label for this gene is hcp1 [H]

Identifier: 50085755

GI number: 50085755

Start: 2646545

End: 2647048

Strand: Reverse

Name: hcp1 [H]

Synonym: ACIAD2689

Alternate gene names: 50085755

Gene position: 2647048-2646545 (Counterclockwise)

Preceding gene: 50085756

Following gene: 50085754

Centisome position: 73.56

GC content: 40.08

Gene sequence:

>504_bases
ATGAAAGATATATACGTTCAATTTCGAGGTAAATATAAGGTTGATGGTGAGTCACGTGATTCTGAGCACAAAGACTGGCT
TGAAGTCAACTCGTGGTCGCATAATATTCGCCAGCCAAAATCTGCAACTTCAAGTAGCGTAGGTGGTCACACTGCTGAAC
GTGTTGAGCATTCAGATATGCTTTTTGTTAAAGATTTGGATGCAACCAGCCCTAAACTGTGGGAAGCATGCTCTGCAGGT
TATACCTTTGATGAAGTACAGATCGATTTTTATCGTGCCAATGGTGATAAACGTATCAAGTACCTTCAAATCAAACTCAA
ACATGTTTTAGTTTCAAGTGTAACTCCGACTGTAAATGAAGAGGGTGTACCTACTGAAGTGTTTGGTTTGAAATATGCTG
CAGTTGAGTGGACTTATAACCAGCAAGACATTAACGGTTCTGCTAAAGGTGCTGTGACTAAAAAATGGTCTCTTTCAAAT
AACACTGCATCTTACGCTGCGTAA

Upstream 100 bases:

>100_bases
TGAGTTGTCAGTTTCTTTAAGACTGGTGACGGAACTTCCGCAGTCCTCTAACTAGAGTGCAGCTCATAATAACGTTAAAT
TAAAATAGGATAATTTTGAA

Downstream 100 bases:

>100_bases
TCATGTTTTGATGGATTTAATAAAGCGCAATACATTATTGCGCTTTATTAAGTTTAAGAATTTGAAGTTATGAATCTCGA
TCATTTGTATCCTTTTGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSN
NTASYAA

Sequences:

>Translated_167_residues
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSN
NTASYAA
>Mature_167_residues
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSN
NTASYAA

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18828; Mature: 18828

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDM
CCEEEEEEECEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCE
LFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNE
EEEEECCCCCCHHHHHHHCCCEECEEEEEEEECCCCCEEEEEEEEEHHHHHHCCCCCCCC
EGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSNNTASYAA
CCCCCHHHCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDM
CCEEEEEEECEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCE
LFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNE
EEEEECCCCCCHHHHHHHCCCEECEEEEEEEECCCCCEEEEEEEEEHHHHHHCCCCCCCC
EGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSNNTASYAA
CCCCCHHHCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]