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The map label for this gene is ygcF [C]

Identifier: 50085673

GI number: 50085673

Start: 2556924

End: 2557661

Strand: Direct

Name: ygcF [C]

Synonym: ACIAD2600

Alternate gene names: 50085673

Gene position: 2556924-2557661 (Clockwise)

Preceding gene: 50085672

Following gene: 50085674

Centisome position: 71.05

GC content: 39.3

Gene sequence:

>738_bases
TTGTTTTCTAATCTTGGTAATTCTGCAATGACTTCTTTACGTTCAACGACAATTCCTGTATCAGACCCTGCGGCGGGATT
ACGTATTACAGAAATTTTCTACTCTTTACAAGGAGAAGCCAATGCTGCAGGTTTACCAACCGTTTTTATTCGTCTCACGG
GTTGCCCTTTACGCTGCACTTATTGTGATACGACCTACTCGTTTGAAGGTGGTGAACGTCTCTCGTTAGATGAAATCATT
AACACTGCTTTATCTTATAAAACACCTTACATTTGTGTGACTGGTGGTGAACCTCTGGCACAACCCAATTGTCTGATTTT
GCTTTCTCGTTTAAGCGATTTAGGATGTCAGGTATCATTGGAAACCAGCGGTACACTTGATGTTTCAAAAGTAGATCCGC
GTGTATCTAAAGTACTGGATTTAAAAACACCTACGTCTGGTGAAGAAAAGCGTAATCTACTGAGTAATCTAGATTATTTG
ACTCAACATGATCAAATCAAATTTGTGATTTGTAATCATGAAGACTATATATGGTCTAAGCAGCAAGTTGTAGAATATCA
ACTTGAAAAGAAAGTGAGCACTGTATGGTTCTCACCTGCATTTGCGGTAGAAAAAGGTGCTGTGAAACTACCTCAACTTG
CGCGTGATTTAGCGCAATGGATTTTAGACGACCACCTCCCAGTTCGTTTTCAGTTACAACTCCATAAACTTTTATGGAAT
GATGAAACAGGTCGTTAA

Upstream 100 bases:

>100_bases
AAACCAGCTTGAACGATTTGCTTCGCGCTGATTAATTCCATTTATTTGCGAAGCTTTAGTCGCTTCTCGTCTCTACGCTC
AGTCATGGTCGTAGAGATTT

Downstream 100 bases:

>100_bases
ATTATTTTTATGAATGGAGAATTTGGTATGCGTCCTCGTGCCATTGTTTTATTGTCAGGCGGCCTAGACTCAACTACCTG
TTTAGCTTGGGCACAAGCAC

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MFSNLGNSAMTSLRSTTIPVSDPAAGLRITEIFYSLQGEANAAGLPTVFIRLTGCPLRCTYCDTTYSFEGGERLSLDEII
NTALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTLDVSKVDPRVSKVLDLKTPTSGEEKRNLLSNLDYL
TQHDQIKFVICNHEDYIWSKQQVVEYQLEKKVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLLWN
DETGR

Sequences:

>Translated_245_residues
MFSNLGNSAMTSLRSTTIPVSDPAAGLRITEIFYSLQGEANAAGLPTVFIRLTGCPLRCTYCDTTYSFEGGERLSLDEII
NTALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTLDVSKVDPRVSKVLDLKTPTSGEEKRNLLSNLDYL
TQHDQIKFVICNHEDYIWSKQQVVEYQLEKKVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLLWN
DETGR
>Mature_245_residues
MFSNLGNSAMTSLRSTTIPVSDPAAGLRITEIFYSLQGEANAAGLPTVFIRLTGCPLRCTYCDTTYSFEGGERLSLDEII
NTALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSLETSGTLDVSKVDPRVSKVLDLKTPTSGEEKRNLLSNLDYL
TQHDQIKFVICNHEDYIWSKQQVVEYQLEKKVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLLWN
DETGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=126, Percent_Identity=34.1269841269841, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27361; Mature: 27361

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSNLGNSAMTSLRSTTIPVSDPAAGLRITEIFYSLQGEANAAGLPTVFIRLTGCPLRCT
CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEE
YCDTTYSFEGGERLSLDEIINTALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSL
EECCEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHEEHHHCCCCEEEE
ETSGTLDVSKVDPRVSKVLDLKTPTSGEEKRNLLSNLDYLTQHDQIKFVICNHEDYIWSK
CCCCCEEHHHCCHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH
QQVVEYQLEKKVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLLWN
HHHHHHHHHHHHHHEEECCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCC
DETGR
CCCCC
>Mature Secondary Structure
MFSNLGNSAMTSLRSTTIPVSDPAAGLRITEIFYSLQGEANAAGLPTVFIRLTGCPLRCT
CCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEE
YCDTTYSFEGGERLSLDEIINTALSYKTPYICVTGGEPLAQPNCLILLSRLSDLGCQVSL
EECCEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHEEHHHCCCCEEEE
ETSGTLDVSKVDPRVSKVLDLKTPTSGEEKRNLLSNLDYLTQHDQIKFVICNHEDYIWSK
CCCCCEEHHHCCHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH
QQVVEYQLEKKVSTVWFSPAFAVEKGAVKLPQLARDLAQWILDDHLPVRFQLQLHKLLWN
HHHHHHHHHHHHHHEEECCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCC
DETGR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]