Click here to switch to the map view.

The map label for this gene is soxD

Identifier: 50085628

GI number: 50085628

Start: 2511513

End: 2511839

Strand: Reverse

Name: soxD

Synonym: ACIAD2551

Alternate gene names: NA

Gene position: 2511839-2511513 (Counterclockwise)

Preceding gene: 50085629

Following gene: 50085627

Centisome position: 69.8

GC content: 40.67

Gene sequence:

>327_bases
ATGAAAATTATGCATTGTCCTTTAAATGGGCCACGAAATATCAGCGAATTTACCTATGGTGGTGAGTTTAAAGACATGCC
GGATCAGAATACGTGTAGTGATCTGGAGTGGGCAGATTATGTATTTAATACCGACAATATTGCTGGTGTGGTCTTGGAGT
GGTGGATGCATACCCCGAGCAGTTATTGGTTCATTGCACAAAGACATACCGTGACCGATGAAATTATAAGAACCTTTGAT
CCTAAGGAAATTTTTGATCAGCGCGTTGACTTTTCTGCCGTAAAAAACAGTTCATCATCTGAACCAGTGAAGGAGTCTTT
CACATGA

Upstream 100 bases:

>100_bases
GCCAGATTTGATCAAGCCATTTGAGCTGTCGCGCTTTAGTCGTTTTCAACAAGTTAATGAAATGGGCGCAACTGCGGCGA
GCCATTAAGGAGAATATGAA

Downstream 100 bases:

>100_bases
GCAATTCAGTTTTACAACGACTCCCACATCCTTATGGCAGTATGATTGATCGTACCCAAGTGATTGAGTTTGAATTTGAT
CAGCAAAAATATCAAGGCTT

Product: sarcosine oxidase subunit D

Products: glycine; formaldehyde; H2O2

Alternate protein names: Sarcosine Oxidase Subunit D; Sarcosine Oxidase Delta Subunit Family; Sarcosine Oxidase Subunit Delta Heterotetrameric; Sarcosine Oxidase Delta Subunit Family Protein; Sarcosine Oxidase Subunit Delta

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MKIMHCPLNGPRNISEFTYGGEFKDMPDQNTCSDLEWADYVFNTDNIAGVVLEWWMHTPSSYWFIAQRHTVTDEIIRTFD
PKEIFDQRVDFSAVKNSSSSEPVKESFT

Sequences:

>Translated_108_residues
MKIMHCPLNGPRNISEFTYGGEFKDMPDQNTCSDLEWADYVFNTDNIAGVVLEWWMHTPSSYWFIAQRHTVTDEIIRTFD
PKEIFDQRVDFSAVKNSSSSEPVKESFT
>Mature_108_residues
MKIMHCPLNGPRNISEFTYGGEFKDMPDQNTCSDLEWADYVFNTDNIAGVVLEWWMHTPSSYWFIAQRHTVTDEIIRTFD
PKEIFDQRVDFSAVKNSSSSEPVKESFT

Specific function: Unknown

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.5.3.1

Molecular weight: Translated: 12576; Mature: 12576

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIMHCPLNGPRNISEFTYGGEFKDMPDQNTCSDLEWADYVFNTDNIAGVVLEWWMHTPS
CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCC
SYWFIAQRHTVTDEIIRTFDPKEIFDQRVDFSAVKNSSSSEPVKESFT
CEEEEEECCCHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKIMHCPLNGPRNISEFTYGGEFKDMPDQNTCSDLEWADYVFNTDNIAGVVLEWWMHTPS
CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCC
SYWFIAQRHTVTDEIIRTFDPKEIFDQRVDFSAVKNSSSSEPVKESFT
CEEEEEECCCHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: sarcosine; H2O; O2

Specific reaction: sarcosine + H2O + O2 = glycine + formaldehyde + H2O2

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA