| Definition | Acinetobacter sp. ADP1 chromosome, complete genome. |
|---|---|
| Accession | NC_005966 |
| Length | 3,598,621 |
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The map label for this gene is ytfM [H]
Identifier: 50085490
GI number: 50085490
Start: 2362957
End: 2365650
Strand: Reverse
Name: ytfM [H]
Synonym: ACIAD2403
Alternate gene names: 50085490
Gene position: 2365650-2362957 (Counterclockwise)
Preceding gene: 50085493
Following gene: 50085489
Centisome position: 65.74
GC content: 41.46
Gene sequence:
>2694_bases ATGCTTGCGACCATAAAATTTAAACAGTCTACGCTGGCTCAGTCTGTACGTTTTATATTAAACGTCCAAGATTTTAACAA ACGTCTTTACACAGGCATGTTACTGGGATTGTGTGTTTCGGCAAGCTATGCGCAAGACGTGGATTCTACGCAAGCCAATG CATCAAAAACCGTACAGACTGTTCCTCCGCAGCCAACAATGACGGATGAACAAAACAATGTTTCGACGCTTCCAACCCAT CAAAACAATCAACCTGAACAGCAGGATAGTTTGGCTGTGTTGCAACAACAAGCACAATCTTCAAAATCAATTGCAGAATT TAAGCCTATTGAGTTTGATGATCTGGGAAGTTTGCCAGATACGACCGTTGATGCATCAATGGCCAATGAAATTTTTAAGG TGGCTGAAGAAGCAAAAGCAGAAGCGCAAGCTTCGAGATCAAAGTCATCTTCACTTCCTGAAAATCAGGCTACTATTCCA CCCGCACAGGATATTGCTCAGATTAATCAGGCACCTGTCAATATTGATAATCTCATGCAACAGATACGCTCTGAAAGCCA GATTAATGTGCAGGCAAACACTTCTGGTCAAACACTCGATGTGCAACAACAACCAGAGCCTGAGAAAAAGAAAGGTTTTT TTCAGCGGATCTTGCAAAGAATTAAACCTAATAATGACCTAAACGGTGCAGCGGTACCACGCATTAGCGCAGATGTGAAA GGTGCGCCTACAGAACTTGCCAATAATATTAAAGCCAAACTTTCAAGTTATTCACAGGAAGCTTTTCAGGATTTTAATGC TTCACTGCCGCAGCTCAGAACGTTATCGACTCAGGCTGCCCAAGCAGTTGGTTATTACAATGCAGAGTTTAAATTTGAAA AAATAAGTGATTCAAGAGTTCTGGTCAATGTAACGCCGCATGACCCAGTGAAAATCGAACAGCAGGATATCGGGTTTTCT GGCGAGGGTGCAAACTTGCCACAGTTTCAGGTCATTCGTTTGGTACCTGAACAGGATGTAGGTGATATTCTGAATCATGG CAAGTACGAAGAAACCAAAACAAGAATTGCCACGGCTGCATCAGATAATGGTTTTTTTGATAGTTATTGGCGTTTACATG ATGTCCGTGTCAATCAACCGCAGAATACTGCAGATATTAATTTAAAGTATGAAACAGGTGATCGCTATAAATTAGGGAAT GTCGAATTTAGAATGAGTGATCCATCCAAAAAAATTCCATTGGATATGGATGTGCTGTTAAGCATGACGCCTTGGAAAGA GGGTGATGACTACACCTTTTGGCGTGTCAATTCCCTTGCTAATAATTTAACCAATTCACGTTATTTTAATTACACACTGG TTGATACGATCAAACCTGACCCAATTCAAAAACCATTAGAGTTACCGCCAGATTTGCAGGCATTGGTCGATCAACAAAAT AATCAGCAAGCTCAAGATACAGTCAACCAGCAGCAGGCAAATAAAAAAGTAGTTTCAGCAAAAGAAGTCACCCAAAATGT AATTGACGAAAAAGAATTTGCTGGAACCCAAGAATCTGCCCAGCAGAATCCTACATTACGTTCACAACTTAGCCAAGAAC AAGCGCAGGAGTCTGAAAGAAATAAACTGGAAAGACAGGCACGTGAAGAAAAGAAAGTTCCTGTAATTGTGACGTTGAAT GCCGATCGTTTGAATAGTATCGAAACGGGTTTTGGTTATGGTACAGACACTGGCTTTCGCGTAAGAAGTCAATATCGCCG CTCTATCGTAAATAGTCGCGGACATTCATTTGATGCTAATATGGAAGTCTCGCAAATCCGTCAGGCAATTGATACACGAT ATAATATTCCTTATAAGCATCCACTTAATGATTACATTAGTATTGTAGGTGGGTTTGAGCGTGAGGTGGATGATAATATT GGACAAAATATTACGCTTGAAACGCAATCTGCTGTAATTGGGGCAGAGCGAATTATCAAGAATCCATTAGGTGGCTGGCA GCATACTTACGGCGTGCGTTATCGTCTGGATGAGTTAAACCAGCGAGGTGTAGTAGATGCATCTAACTTACCAGATGCCT TCAAAGTCCCTGGTTCTGATTCTACTCAGCAGGCTTTATTGTTTGGTTATACTTTGTCTAAAACCTCGAGCAACAACAAT ATCAACCCAACCAGAGGCTTTAAGCAGACGTATAAACTACAGGTTGCGAGCGATTCTGTTGCCTCAGATGCCAATATGAT CATCCCTACAGCGGGATGGCGATTTATTTATTCACTGGGTGAAAATGACGATCATCAGTTTGTAGGCCGTACAGACTTAG GATATATCTTTACTGATGAGTTTCAAAAAGTACCTTATAACATAAGATATTTTGCAGGTGGCGACGACAGTATTCGTGGA TTTGACTATAAGAGCTTGGCGCCTGAACAATTTGGTTATAAAGTCGGTGGACAAGCGCTTGCTGTGGGGTCACTTGAGTA CAATTATCAATTCAAGGAAGGCTGGCGAGCTGCGATATTTTCAGATTTTGGTAATGCATACGACAAAGATTTTAATACAC CCACTGCTTACAGTGTAGGGGTGGGTATTCGCTGGAAATCGCCTGTCGGCCCAATCAGGATTGATGTGGCTTCGGGTATT TCTGACGATAACCACCCAATTCGATTACATTTTTTTATTGGCCCGCAACTTTAA
Upstream 100 bases:
>100_bases TGATATTTCAATGATTAAATCTAGTGAAAAATCAAAAGATTTAAGATAATTATCGGTACATTAGCGAAACCCATTAAAAT AAGTTTAGAGTTCATTGTAC
Downstream 100 bases:
>100_bases AACAAAATTGGCTTTGGGATAATTATGGCTGAACTTGAACAGCAACCAGCACAGACACCACAAAAACAACGTCGCATTTT AAGAAGTGTATTGCTGACAT
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 897; Mature: 897
Protein sequence:
>897_residues MLATIKFKQSTLAQSVRFILNVQDFNKRLYTGMLLGLCVSASYAQDVDSTQANASKTVQTVPPQPTMTDEQNNVSTLPTH QNNQPEQQDSLAVLQQQAQSSKSIAEFKPIEFDDLGSLPDTTVDASMANEIFKVAEEAKAEAQASRSKSSSLPENQATIP PAQDIAQINQAPVNIDNLMQQIRSESQINVQANTSGQTLDVQQQPEPEKKKGFFQRILQRIKPNNDLNGAAVPRISADVK GAPTELANNIKAKLSSYSQEAFQDFNASLPQLRTLSTQAAQAVGYYNAEFKFEKISDSRVLVNVTPHDPVKIEQQDIGFS GEGANLPQFQVIRLVPEQDVGDILNHGKYEETKTRIATAASDNGFFDSYWRLHDVRVNQPQNTADINLKYETGDRYKLGN VEFRMSDPSKKIPLDMDVLLSMTPWKEGDDYTFWRVNSLANNLTNSRYFNYTLVDTIKPDPIQKPLELPPDLQALVDQQN NQQAQDTVNQQQANKKVVSAKEVTQNVIDEKEFAGTQESAQQNPTLRSQLSQEQAQESERNKLERQAREEKKVPVIVTLN ADRLNSIETGFGYGTDTGFRVRSQYRRSIVNSRGHSFDANMEVSQIRQAIDTRYNIPYKHPLNDYISIVGGFEREVDDNI GQNITLETQSAVIGAERIIKNPLGGWQHTYGVRYRLDELNQRGVVDASNLPDAFKVPGSDSTQQALLFGYTLSKTSSNNN INPTRGFKQTYKLQVASDSVASDANMIIPTAGWRFIYSLGENDDHQFVGRTDLGYIFTDEFQKVPYNIRYFAGGDDSIRG FDYKSLAPEQFGYKVGGQALAVGSLEYNYQFKEGWRAAIFSDFGNAYDKDFNTPTAYSVGVGIRWKSPVGPIRIDVASGI SDDNHPIRLHFFIGPQL
Sequences:
>Translated_897_residues MLATIKFKQSTLAQSVRFILNVQDFNKRLYTGMLLGLCVSASYAQDVDSTQANASKTVQTVPPQPTMTDEQNNVSTLPTH QNNQPEQQDSLAVLQQQAQSSKSIAEFKPIEFDDLGSLPDTTVDASMANEIFKVAEEAKAEAQASRSKSSSLPENQATIP PAQDIAQINQAPVNIDNLMQQIRSESQINVQANTSGQTLDVQQQPEPEKKKGFFQRILQRIKPNNDLNGAAVPRISADVK GAPTELANNIKAKLSSYSQEAFQDFNASLPQLRTLSTQAAQAVGYYNAEFKFEKISDSRVLVNVTPHDPVKIEQQDIGFS GEGANLPQFQVIRLVPEQDVGDILNHGKYEETKTRIATAASDNGFFDSYWRLHDVRVNQPQNTADINLKYETGDRYKLGN VEFRMSDPSKKIPLDMDVLLSMTPWKEGDDYTFWRVNSLANNLTNSRYFNYTLVDTIKPDPIQKPLELPPDLQALVDQQN NQQAQDTVNQQQANKKVVSAKEVTQNVIDEKEFAGTQESAQQNPTLRSQLSQEQAQESERNKLERQAREEKKVPVIVTLN ADRLNSIETGFGYGTDTGFRVRSQYRRSIVNSRGHSFDANMEVSQIRQAIDTRYNIPYKHPLNDYISIVGGFEREVDDNI GQNITLETQSAVIGAERIIKNPLGGWQHTYGVRYRLDELNQRGVVDASNLPDAFKVPGSDSTQQALLFGYTLSKTSSNNN INPTRGFKQTYKLQVASDSVASDANMIIPTAGWRFIYSLGENDDHQFVGRTDLGYIFTDEFQKVPYNIRYFAGGDDSIRG FDYKSLAPEQFGYKVGGQALAVGSLEYNYQFKEGWRAAIFSDFGNAYDKDFNTPTAYSVGVGIRWKSPVGPIRIDVASGI SDDNHPIRLHFFIGPQL >Mature_897_residues MLATIKFKQSTLAQSVRFILNVQDFNKRLYTGMLLGLCVSASYAQDVDSTQANASKTVQTVPPQPTMTDEQNNVSTLPTH QNNQPEQQDSLAVLQQQAQSSKSIAEFKPIEFDDLGSLPDTTVDASMANEIFKVAEEAKAEAQASRSKSSSLPENQATIP PAQDIAQINQAPVNIDNLMQQIRSESQINVQANTSGQTLDVQQQPEPEKKKGFFQRILQRIKPNNDLNGAAVPRISADVK GAPTELANNIKAKLSSYSQEAFQDFNASLPQLRTLSTQAAQAVGYYNAEFKFEKISDSRVLVNVTPHDPVKIEQQDIGFS GEGANLPQFQVIRLVPEQDVGDILNHGKYEETKTRIATAASDNGFFDSYWRLHDVRVNQPQNTADINLKYETGDRYKLGN VEFRMSDPSKKIPLDMDVLLSMTPWKEGDDYTFWRVNSLANNLTNSRYFNYTLVDTIKPDPIQKPLELPPDLQALVDQQN NQQAQDTVNQQQANKKVVSAKEVTQNVIDEKEFAGTQESAQQNPTLRSQLSQEQAQESERNKLERQAREEKKVPVIVTLN ADRLNSIETGFGYGTDTGFRVRSQYRRSIVNSRGHSFDANMEVSQIRQAIDTRYNIPYKHPLNDYISIVGGFEREVDDNI GQNITLETQSAVIGAERIIKNPLGGWQHTYGVRYRLDELNQRGVVDASNLPDAFKVPGSDSTQQALLFGYTLSKTSSNNN INPTRGFKQTYKLQVASDSVASDANMIIPTAGWRFIYSLGENDDHQFVGRTDLGYIFTDEFQKVPYNIRYFAGGDDSIRG FDYKSLAPEQFGYKVGGQALAVGSLEYNYQFKEGWRAAIFSDFGNAYDKDFNTPTAYSVGVGIRWKSPVGPIRIDVASGI SDDNHPIRLHFFIGPQL
Specific function: Unknown
COG id: COG0729
COG function: function code M; Outer membrane protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0698 [H]
Homologues:
Organism=Escherichia coli, GI1790666, Length=362, Percent_Identity=35.9116022099448, Blast_Score=201, Evalue=2e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 100304; Mature: 100304
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLATIKFKQSTLAQSVRFILNVQDFNKRLYTGMLLGLCVSASYAQDVDSTQANASKTVQT CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCCEEE VPPQPTMTDEQNNVSTLPTHQNNQPEQQDSLAVLQQQAQSSKSIAEFKPIEFDDLGSLPD CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCHHCCCCCCC TTVDASMANEIFKVAEEAKAEAQASRSKSSSLPENQATIPPAQDIAQINQAPVNIDNLMQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHH QIRSESQINVQANTSGQTLDVQQQPEPEKKKGFFQRILQRIKPNNDLNGAAVPRISADVK HHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GAPTELANNIKAKLSSYSQEAFQDFNASLPQLRTLSTQAAQAVGYYNAEFKFEKISDSRV CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEECCEEEEEEECCCEE LVNVTPHDPVKIEQQDIGFSGEGANLPQFQVIRLVPEQDVGDILNHGKYEETKTRIATAA EEEECCCCCEEEEHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHEEEEC SDNGFFDSYWRLHDVRVNQPQNTADINLKYETGDRYKLGNVEFRMSDPSKKIPLDMDVLL CCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEECCEEEEECCCCCCCCCCHHHHE SMTPWKEGDDYTFWRVNSLANNLTNSRYFNYTLVDTIKPDPIQKPLELPPDLQALVDQQN EECCCCCCCCEEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCC NQQAQDTVNQQQANKKVVSAKEVTQNVIDEKEFAGTQESAQQNPTLRSQLSQEQAQESER CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH NKLERQAREEKKVPVIVTLNADRLNSIETGFGYGTDTGFRVRSQYRRSIVNSRGHSFDAN HHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC MEVSQIRQAIDTRYNIPYKHPLNDYISIVGGFEREVDDNIGQNITLETQSAVIGAERIIK CCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHH NPLGGWQHTYGVRYRLDELNQRGVVDASNLPDAFKVPGSDSTQQALLFGYTLSKTSSNNN CCCCCCCCCCCEEEEHHHCCCCCCEECCCCCCCEECCCCCCCCCEEEEEEEEECCCCCCC INPTRGFKQTYKLQVASDSVASDANMIIPTAGWRFIYSLGENDDHQFVGRTDLGYIFTDE CCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCEEECCCCCCEEECCC FQKVPYNIRYFAGGDDSIRGFDYKSLAPEQFGYKVGGQALAVGSLEYNYQFKEGWRAAIF HHHCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECEEECEECCCCCHHHHH SDFGNAYDKDFNTPTAYSVGVGIRWKSPVGPIRIDVASGISDDNHPIRLHFFIGPQL HHHCCHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCC >Mature Secondary Structure MLATIKFKQSTLAQSVRFILNVQDFNKRLYTGMLLGLCVSASYAQDVDSTQANASKTVQT CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCCEEE VPPQPTMTDEQNNVSTLPTHQNNQPEQQDSLAVLQQQAQSSKSIAEFKPIEFDDLGSLPD CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCHHCCCCCCC TTVDASMANEIFKVAEEAKAEAQASRSKSSSLPENQATIPPAQDIAQINQAPVNIDNLMQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHH QIRSESQINVQANTSGQTLDVQQQPEPEKKKGFFQRILQRIKPNNDLNGAAVPRISADVK HHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GAPTELANNIKAKLSSYSQEAFQDFNASLPQLRTLSTQAAQAVGYYNAEFKFEKISDSRV CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEECCEEEEEEECCCEE LVNVTPHDPVKIEQQDIGFSGEGANLPQFQVIRLVPEQDVGDILNHGKYEETKTRIATAA EEEECCCCCEEEEHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHEEEEC SDNGFFDSYWRLHDVRVNQPQNTADINLKYETGDRYKLGNVEFRMSDPSKKIPLDMDVLL CCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEECCEEEEECCCCCCCCCCHHHHE SMTPWKEGDDYTFWRVNSLANNLTNSRYFNYTLVDTIKPDPIQKPLELPPDLQALVDQQN EECCCCCCCCEEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCC NQQAQDTVNQQQANKKVVSAKEVTQNVIDEKEFAGTQESAQQNPTLRSQLSQEQAQESER CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHH NKLERQAREEKKVPVIVTLNADRLNSIETGFGYGTDTGFRVRSQYRRSIVNSRGHSFDAN HHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC MEVSQIRQAIDTRYNIPYKHPLNDYISIVGGFEREVDDNIGQNITLETQSAVIGAERIIK CCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHH NPLGGWQHTYGVRYRLDELNQRGVVDASNLPDAFKVPGSDSTQQALLFGYTLSKTSSNNN CCCCCCCCCCCEEEEHHHCCCCCCEECCCCCCCEECCCCCCCCCEEEEEEEEECCCCCCC INPTRGFKQTYKLQVASDSVASDANMIIPTAGWRFIYSLGENDDHQFVGRTDLGYIFTDE CCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCEEECCCCCCEEECCC FQKVPYNIRYFAGGDDSIRGFDYKSLAPEQFGYKVGGQALAVGSLEYNYQFKEGWRAAIF HHHCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECEEECEECCCCCHHHHH SDFGNAYDKDFNTPTAYSVGVGIRWKSPVGPIRIDVASGISDDNHPIRLHFFIGPQL HHHCCHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]