Click here to switch to the map view.

The map label for this gene is csoR [H]

Identifier: 50085485

GI number: 50085485

Start: 2355083

End: 2355436

Strand: Reverse

Name: csoR [H]

Synonym: ACIAD2398

Alternate gene names: 50085485

Gene position: 2355436-2355083 (Counterclockwise)

Preceding gene: 50085489

Following gene: 50085484

Centisome position: 65.45

GC content: 43.5

Gene sequence:

>354_bases
GTGCAAGCTGAAGGTTCCAATGATCCATCAAAACGATGTGATGACTGCAATAACGAAGTTTCTGATGATTTACATATGTC
TCAAAAACACGTCATACAACCAGACAAAAAAGCGTTGCTTAATCGATTGAGCCGCATTGGTGGGCAGGTGAACGGTGTTG
CACAGATGGTGGAAAATGATCGTTACTGTGTAGATATTTTGACGCAAATTTCTGCGATACGCTCTGCACTTGACTCGGTA
TCTACACAGTTGCTGAATCATCATGTACAAGGATGCGTGCGACGTGCTGTAGTCGAAGATGGGGGGGAGGAAGTGATTGG
TGAGCTTTTGATGCTGATCAAAAAAATGCGTTAA

Upstream 100 bases:

>100_bases
TTATATGAACCATCATTTTTACATGTAATGATTGAGTTAAACCCAAATGGATGAGTAAATGCCAAAGCCACAAAAAACAA
CCAAGCTAGCAAAATCTTCT

Downstream 100 bases:

>100_bases
ACCAGTTTCGCTAAAATATATCATCTACGATACGCAAAACAACACAAACAAGTGTTTGGGGAAATCATCAAAATTCAGTA
TCATGACGCGCAAAGGAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Copper-sensitive operon repressor [H]

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MQAEGSNDPSKRCDDCNNEVSDDLHMSQKHVIQPDKKALLNRLSRIGGQVNGVAQMVENDRYCVDILTQISAIRSALDSV
STQLLNHHVQGCVRRAVVEDGGEEVIGELLMLIKKMR

Sequences:

>Translated_117_residues
MQAEGSNDPSKRCDDCNNEVSDDLHMSQKHVIQPDKKALLNRLSRIGGQVNGVAQMVENDRYCVDILTQISAIRSALDSV
STQLLNHHVQGCVRRAVVEDGGEEVIGELLMLIKKMR
>Mature_117_residues
MQAEGSNDPSKRCDDCNNEVSDDLHMSQKHVIQPDKKALLNRLSRIGGQVNGVAQMVENDRYCVDILTQISAIRSALDSV
STQLLNHHVQGCVRRAVVEDGGEEVIGELLMLIKKMR

Specific function: Copper-sensitive repressor that has a key role in copper homeostasis. Negatively regulates expression of the copZA operon and of ycnJ. In the absence of copper ions, binds with high affinity to the copZA promoter and represses the transcription. In the pr

COG id: COG1937

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsoR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003735 [H]

Pfam domain/function: PF02583 DUF156 [H]

EC number: NA

Molecular weight: Translated: 12985; Mature: 12985

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAEGSNDPSKRCDDCNNEVSDDLHMSQKHVIQPDKKALLNRLSRIGGQVNGVAQMVEND
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC
RYCVDILTQISAIRSALDSVSTQLLNHHVQGCVRRAVVEDGGEEVIGELLMLIKKMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQAEGSNDPSKRCDDCNNEVSDDLHMSQKHVIQPDKKALLNRLSRIGGQVNGVAQMVEND
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC
RYCVDILTQISAIRSALDSVSTQLLNHHVQGCVRRAVVEDGGEEVIGELLMLIKKMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]