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The map label for this gene is rlpA [C]

Identifier: 50085368

GI number: 50085368

Start: 2236319

End: 2236933

Strand: Direct

Name: rlpA [C]

Synonym: ACIAD2265

Alternate gene names: 50085368

Gene position: 2236319-2236933 (Clockwise)

Preceding gene: 50085367

Following gene: 50085369

Centisome position: 62.14

GC content: 41.14

Gene sequence:

>615_bases
ATGCAGTTTAGGTTAAAGTACGCTTTAGCACTGAGTATTGGTCTGACGGTAAGTCATTCTCAAGCTGAAATGGTGCCTGC
ATCATCTTTAAATAGCGATAATGATAGTTCAAGCTTGGCAGCACGTGTCTTAAATAAAGATGCTCAAAACAACTTTAACT
CTCACTTCTCAAATCTTAATAGTCTTTCAATCACCGAAAGTTCGGGTGACAAAATTCGTCGTCAAACCATTGCGGCTAAA
ATCGAAATCCCTGAAGAAGAGCCTTCAGTGATTGAAAAATTAAATACTGTGGCGTCAAATACAGTTCGTAAATTCAGCCA
GACAGGAATTGCATCTTGGTATGGCCGTCAGTTTCATGGTCGCAAAACTGCGAACGGCGAAACTTTCGATATGAATGAAC
TTACTGCTGCTCACCGTAGCTTGCCACTGAATTGTTATATCCGCGTGACAAACAAGGATAATGGCAAAAGCGTTGTTGTA
AAGGTAAATGACCGAGGTCCATTTCATGGTAACCGCGTCTTAGATTTATCTTATGCTGCAGCAAAGCGAATTGGAATGAC
CAACGCTGGCACAGGTAAAGTAAGTATCGAGCGAGTTGATGGTCCAAATTCATAA

Upstream 100 bases:

>100_bases
CCTCCACCATAAAGCAATTGCAAAAGTGAATAATTTAGGCTGTTCACAATATGTTTAGCGTTTTGCTCAGCCTTGTGAAT
TGTCTCTAGGAGTCTAAATA

Downstream 100 bases:

>100_bases
GATTTAGCTCCCTCACATTTGCGATAAAGAGACCACCACTTGGTGGTTTCTTTATTTTTAGTCGATAGTTTTTGTTCTAA
CTAATATCCTCGCTTATAAG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MQFRLKYALALSIGLTVSHSQAEMVPASSLNSDNDSSSLAARVLNKDAQNNFNSHFSNLNSLSITESSGDKIRRQTIAAK
IEIPEEEPSVIEKLNTVASNTVRKFSQTGIASWYGRQFHGRKTANGETFDMNELTAAHRSLPLNCYIRVTNKDNGKSVVV
KVNDRGPFHGNRVLDLSYAAAKRIGMTNAGTGKVSIERVDGPNS

Sequences:

>Translated_204_residues
MQFRLKYALALSIGLTVSHSQAEMVPASSLNSDNDSSSLAARVLNKDAQNNFNSHFSNLNSLSITESSGDKIRRQTIAAK
IEIPEEEPSVIEKLNTVASNTVRKFSQTGIASWYGRQFHGRKTANGETFDMNELTAAHRSLPLNCYIRVTNKDNGKSVVV
KVNDRGPFHGNRVLDLSYAAAKRIGMTNAGTGKVSIERVDGPNS
>Mature_204_residues
MQFRLKYALALSIGLTVSHSQAEMVPASSLNSDNDSSSLAARVLNKDAQNNFNSHFSNLNSLSITESSGDKIRRQTIAAK
IEIPEEEPSVIEKLNTVASNTVRKFSQTGIASWYGRQFHGRKTANGETFDMNELTAAHRSLPLNCYIRVTNKDNGKSVVV
KVNDRGPFHGNRVLDLSYAAAKRIGMTNAGTGKVSIERVDGPNS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=85, Percent_Identity=48.2352941176471, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 22270; Mature: 22270

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFRLKYALALSIGLTVSHSQAEMVPASSLNSDNDSSSLAARVLNKDAQNNFNSHFSNLN
CCEEEEEEEEEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCC
SLSITESSGDKIRRQTIAAKIEIPEEEPSVIEKLNTVASNTVRKFSQTGIASWYGRQFHG
CEEEECCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
RKTANGETFDMNELTAAHRSLPLNCYIRVTNKDNGKSVVVKVNDRGPFHGNRVLDLSYAA
CCCCCCCEECHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEHHHH
AKRIGMTNAGTGKVSIERVDGPNS
HHHCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MQFRLKYALALSIGLTVSHSQAEMVPASSLNSDNDSSSLAARVLNKDAQNNFNSHFSNLN
CCEEEEEEEEEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCC
SLSITESSGDKIRRQTIAAKIEIPEEEPSVIEKLNTVASNTVRKFSQTGIASWYGRQFHG
CEEEECCCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
RKTANGETFDMNELTAAHRSLPLNCYIRVTNKDNGKSVVVKVNDRGPFHGNRVLDLSYAA
CCCCCCCEECHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEHHHH
AKRIGMTNAGTGKVSIERVDGPNS
HHHCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]