Click here to switch to the map view.

The map label for this gene is sodM [H]

Identifier: 50085195

GI number: 50085195

Start: 2056089

End: 2056700

Strand: Direct

Name: sodM [H]

Synonym: ACIAD2072

Alternate gene names: 50085195

Gene position: 2056089-2056700 (Clockwise)

Preceding gene: 50085194

Following gene: 50085196

Centisome position: 57.14

GC content: 41.18

Gene sequence:

>612_bases
ATGGCATACTCTTTACCTGCCCTTCCTTATGCTTATGATGCGCTTGAACCGAACATTGATGCTAAGACCATGGAAATTCA
TCACACGAAGCATCATCAAACCTATATCAACAATATTAATGCCGCGATTGAGGGAACTGAATGGGAAAAATTGACTATAG
AAAAACTGGTGAGCAAAGTGGATGAGGTTCCCGCCGACATCAAAAATATTGTGATCAATAACGGTGGTGGTCATGCTAAT
CATTCATTGTTCTGGACTGTGATGAGTCCAAAAGGCGGTGGTGAACCTGTCAATGAAGTTGCACATGCCATTAATAATGA
ACTGAGTGGGTTTGATGCATTTAAAGATGCTTTTACCAAAGCAGCGATTAGTCGATTTGGCAGTGGATGGGCATGGCTTA
GCGTAACGCCAGAGAAAAAATTGATCGTTGAAAGTAGTGGTAATCAGGACTCCCCTTTAATGCATGGTAACACACCTATT
TTAGGTCTGGATGTATGGGAACATGCCTACTATTTGAAGTATCAAAACCGTCGTCCTGAATATATTGCTGCATTTTATAA
TGTTGTCGACTGGCATGAAGTTAATCGTCGTTATCTGGGTGCGATTCGATAA

Upstream 100 bases:

>100_bases
AGATAATAATAATGATTATCAATATATTTACATAATCTATAACTTCTCCTAAACTCGAATTGATCTACATATTGCAAACT
TTAAAAAGGATAAATTCATT

Downstream 100 bases:

>100_bases
AGAGAGCTTTGATTTGAATACAACAATGGGTTTTTACGAGATGCCTCTCTTTCATCTATTCCGTTTTTTTCTTGGTTTAT
TGATTTTAATGGGAGGATTA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAYSLPALPYAYDALEPNIDAKTMEIHHTKHHQTYINNINAAIEGTEWEKLTIEKLVSKVDEVPADIKNIVINNGGGHAN
HSLFWTVMSPKGGGEPVNEVAHAINNELSGFDAFKDAFTKAAISRFGSGWAWLSVTPEKKLIVESSGNQDSPLMHGNTPI
LGLDVWEHAYYLKYQNRRPEYIAAFYNVVDWHEVNRRYLGAIR

Sequences:

>Translated_203_residues
MAYSLPALPYAYDALEPNIDAKTMEIHHTKHHQTYINNINAAIEGTEWEKLTIEKLVSKVDEVPADIKNIVINNGGGHAN
HSLFWTVMSPKGGGEPVNEVAHAINNELSGFDAFKDAFTKAAISRFGSGWAWLSVTPEKKLIVESSGNQDSPLMHGNTPI
LGLDVWEHAYYLKYQNRRPEYIAAFYNVVDWHEVNRRYLGAIR
>Mature_202_residues
AYSLPALPYAYDALEPNIDAKTMEIHHTKHHQTYINNINAAIEGTEWEKLTIEKLVSKVDEVPADIKNIVINNGGGHANH
SLFWTVMSPKGGGEPVNEVAHAINNELSGFDAFKDAFTKAAISRFGSGWAWLSVTPEKKLIVESSGNQDSPLMHGNTPIL
GLDVWEHAYYLKYQNRRPEYIAAFYNVVDWHEVNRRYLGAIR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=204, Percent_Identity=45.5882352941176, Blast_Score=185, Evalue=2e-47,
Organism=Homo sapiens, GI67782305, Length=204, Percent_Identity=45.5882352941176, Blast_Score=185, Evalue=2e-47,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=37.6237623762376, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=57.0731707317073, Blast_Score=234, Evalue=3e-63,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=43.8775510204082, Blast_Score=178, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=41.6666666666667, Blast_Score=155, Evalue=9e-39,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=38.5, Blast_Score=151, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=209, Percent_Identity=36.8421052631579, Blast_Score=132, Evalue=3e-32,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=40.1960784313725, Blast_Score=153, Evalue=8e-38,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22834; Mature: 22703

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSLPALPYAYDALEPNIDAKTMEIHHTKHHQTYINNINAAIEGTEWEKLTIEKLVSKV
CCCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCEECCCCCHHHHHHHHHHHH
DEVPADIKNIVINNGGGHANHSLFWTVMSPKGGGEPVNEVAHAINNELSGFDAFKDAFTK
HHCCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
AAISRFGSGWAWLSVTPEKKLIVESSGNQDSPLMHGNTPILGLDVWEHAYYLKYQNRRPE
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCEEECCCCEEEEEHHHCEEEEEECCCCCH
YIAAFYNVVDWHEVNRRYLGAIR
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AYSLPALPYAYDALEPNIDAKTMEIHHTKHHQTYINNINAAIEGTEWEKLTIEKLVSKV
CCCCCCCCCCHHCCCCCCCCEEEEEECCHHHHHHHHCCCCEECCCCCHHHHHHHHHHHH
DEVPADIKNIVINNGGGHANHSLFWTVMSPKGGGEPVNEVAHAINNELSGFDAFKDAFTK
HHCCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
AAISRFGSGWAWLSVTPEKKLIVESSGNQDSPLMHGNTPILGLDVWEHAYYLKYQNRRPE
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCEEECCCCEEEEEHHHCEEEEEECCCCCH
YIAAFYNVVDWHEVNRRYLGAIR
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA