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The map label for this gene is ybfI [H]

Identifier: 50085157

GI number: 50085157

Start: 2013719

End: 2014549

Strand: Direct

Name: ybfI [H]

Synonym: ACIAD2022

Alternate gene names: 50085157

Gene position: 2013719-2014549 (Clockwise)

Preceding gene: 50085154

Following gene: 50085158

Centisome position: 55.96

GC content: 41.76

Gene sequence:

>831_bases
ATGTCTCGACGACCGCGTGAACAGGTCAACTATCTTCATCTAAAAGAACTTGGCGGGCTAGAAATGCTTAGCGCCCAGTA
CTACCAGCAAGAGTTTTCACGTCATGTTCATGAGGGATTCTGTATTGGTGTCATTGAGGAAGGAGCTCAGCGCTTTTATC
GCACTGGTGGCGATCATATTGCTCCCAAAGGCGATATTATTTTGGTCAATGCAGATGAAATACATACGGGTTCATCTGCG
GTTGAAACAGGTTGGCGTTATCGGGCTATTTATCCCACACCAGAGATTCTGGATGCTTTAACCCGTGATATCCTCTCAAA
TAAAGGTTTTGTTCCATGGTTTACTCAAGCTGTAGTTCACGATCAAGGTCTTGCACAACAATTACGGCTGTTGTTTGATC
TTCTTGAACAACCCAATAACTTACTGCTCAAAGAGACGATGTTTCTTTCAACAACTGCGTGGCTTATTTCTCGTTACAGT
CAAAGTAAACCTTCTCCTTTAGTCCTGAATGATAGTAAATCCAGCATTTTAAATATCCAAGACATGATCGCAAGCCTGCC
AGAACATGATTTTTCATTGAGTGAGCTTGCTGCTGCACATTTAAGCCAATGGCATTTTTTAAGACAGTTTAAGAAGCATG
TCGGTTTCTCTCCTCATGCTTGGCTCATTCAATGTCGCATTCTCAAAGCACAGAAATTATTACGTCAAGGTATTAGCATA
TCCGAGGTGTCCCAACGATGCAGCTTTTCCGATCAGAGTCATTTTACGAGACACTTCAAAAATACTTTTGGAATTACACC
AGGAGGTTATATTCGTAGTCTAAAGCCTTAA

Upstream 100 bases:

>100_bases
TTTGATGCAAAAAATTTAAAGATAAAAACAGCAATTTTATTCTATATGCATTGAACGGTTTAAGTCATGTTGAATAGATT
GTATTACAGGTAAGGTAACA

Downstream 100 bases:

>100_bases
ATAAGCAATTTTGTTCAATATTTTTTTATCAATTATGGCCAACATACCAGAATGTGATTAATTAATGCGGTCATTATGAA
TCATTCATTTTCCAACCATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSRRPREQVNYLHLKELGGLEMLSAQYYQQEFSRHVHEGFCIGVIEEGAQRFYRTGGDHIAPKGDIILVNADEIHTGSSA
VETGWRYRAIYPTPEILDALTRDILSNKGFVPWFTQAVVHDQGLAQQLRLLFDLLEQPNNLLLKETMFLSTTAWLISRYS
QSKPSPLVLNDSKSSILNIQDMIASLPEHDFSLSELAAAHLSQWHFLRQFKKHVGFSPHAWLIQCRILKAQKLLRQGISI
SEVSQRCSFSDQSHFTRHFKNTFGITPGGYIRSLKP

Sequences:

>Translated_276_residues
MSRRPREQVNYLHLKELGGLEMLSAQYYQQEFSRHVHEGFCIGVIEEGAQRFYRTGGDHIAPKGDIILVNADEIHTGSSA
VETGWRYRAIYPTPEILDALTRDILSNKGFVPWFTQAVVHDQGLAQQLRLLFDLLEQPNNLLLKETMFLSTTAWLISRYS
QSKPSPLVLNDSKSSILNIQDMIASLPEHDFSLSELAAAHLSQWHFLRQFKKHVGFSPHAWLIQCRILKAQKLLRQGISI
SEVSQRCSFSDQSHFTRHFKNTFGITPGGYIRSLKP
>Mature_275_residues
SRRPREQVNYLHLKELGGLEMLSAQYYQQEFSRHVHEGFCIGVIEEGAQRFYRTGGDHIAPKGDIILVNADEIHTGSSAV
ETGWRYRAIYPTPEILDALTRDILSNKGFVPWFTQAVVHDQGLAQQLRLLFDLLEQPNNLLLKETMFLSTTAWLISRYSQ
SKPSPLVLNDSKSSILNIQDMIASLPEHDFSLSELAAAHLSQWHFLRQFKKHVGFSPHAWLIQCRILKAQKLLRQGISIS
EVSQRCSFSDQSHFTRHFKNTFGITPGGYIRSLKP

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31547; Mature: 31416

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRPREQVNYLHLKELGGLEMLSAQYYQQEFSRHVHEGFCIGVIEEGAQRFYRTGGDHI
CCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCC
APKGDIILVNADEIHTGSSAVETGWRYRAIYPTPEILDALTRDILSNKGFVPWFTQAVVH
CCCCCEEEEECCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
DQGLAQQLRLLFDLLEQPNNLLLKETMFLSTTAWLISRYSQSKPSPLVLNDSKSSILNIQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
DMIASLPEHDFSLSELAAAHLSQWHFLRQFKKHVGFSPHAWLIQCRILKAQKLLRQGISI
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCH
SEVSQRCSFSDQSHFTRHFKNTFGITPGGYIRSLKP
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRRPREQVNYLHLKELGGLEMLSAQYYQQEFSRHVHEGFCIGVIEEGAQRFYRTGGDHI
CCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCC
APKGDIILVNADEIHTGSSAVETGWRYRAIYPTPEILDALTRDILSNKGFVPWFTQAVVH
CCCCCEEEEECCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
DQGLAQQLRLLFDLLEQPNNLLLKETMFLSTTAWLISRYSQSKPSPLVLNDSKSSILNIQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
DMIASLPEHDFSLSELAAAHLSQWHFLRQFKKHVGFSPHAWLIQCRILKAQKLLRQGISI
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCH
SEVSQRCSFSDQSHFTRHFKNTFGITPGGYIRSLKP
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]