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The map label for this gene is ydcO [H]

Identifier: 50085119

GI number: 50085119

Start: 1971185

End: 1972360

Strand: Direct

Name: ydcO [H]

Synonym: ACIAD1982

Alternate gene names: 50085119

Gene position: 1971185-1972360 (Clockwise)

Preceding gene: 50085118

Following gene: 161349964

Centisome position: 54.78

GC content: 41.84

Gene sequence:

>1176_bases
ATGCAAAAATTTATTCGTGATTTCACCCTTCCTGCTGCATTTGCTGGATTTGTCACCTTCCTGATAGGAATAAGTGTTTC
ATCAGTTCTGGTCATTCAGGCAGCACAGATTTTAGGGGCCAATACTCCACAGATTACATCATGGTTTTGGGCACTAGGAA
TCGGAATAGGATTATCGGGTCTGATTTTGTCATGGAAATTCAAATATCCTGTTGCAACATCTTGGTCTACAGCAGGTTTG
GCTTTAATTATTGCAACGGGAAGTGGCTATAGTTTACATGAAGCCATTGGGGCTTTTTTGCTCTGTGGGCTACTCACGGC
GCTATTGGGTTTTTTCGGTGTGTTTCAAAAAGCGCTTGCTTATATTCCCCAGAGTCTTACCAGTGCCATGCTTGCTGGTG
TTTTGCTCAAGTTTGGAATCGCTATTTTTGGCAACATGCAAGATCATTGGCAATTTATTATTAGCCTATTGGCAGTTTAT
ATCGTATCTAAACGCTTATGGCCACGTTATTGCATTGTGATTACCGTAATTGCTGGCGTGATGATTTGTCCATTTTTTAT
GGAGTTTCATCTACCTACGTTACATTGGGAATTGGCGAAACCTGAGTGGATTACGCCTCACTTTACAGGATCTGCAATTC
TAGGGCTGGCTTTACCTCTTTTTGTCATTAATATGGCATCTCAGTATTTACCTGGTATTGCCATGATCAAAAGCTATGGT
TATAACCCAAATGTTAATCAGCTTATAGGATGGACGGGTGCCACCCAGACTCTTTTGGCACCTTTTGGCTGTTATACAGT
TAATATCGCAGCGATTAGCGCCGCCGTAAGTCTGGATGATCAGGTGCACCCCGATCCTGCCAAGCGTTATATCGCAGGGA
TCAGTTGTGGTTTCTTTTATATATTAATGGGATTATTTGCTGCCACCCTGACCAGTTTACTGATGTCGTTTCCTTCTTTA
TTTATCGTGGCGCTTGCAGGAATCGCTCTTTTCGGCACGATCAGCCATAACATTGCAATTGCCTTTCAAGAACCAACTGA
TCGAGAAGCTGCTTTACTTACATTTTTATGTAGTGCATCAGGTATTCAATTCTTTGGAATTGGATCGGCCTTCTGGGGGC
TGATCGTCGGTGTGATTGTTTCAATGGTTCTCAAAACAAAATTTAAAAAATCTTAA

Upstream 100 bases:

>100_bases
TTTGTTTAAAACATTATCAGATTGGAATACAATTTTGAACGCTTAAATATCTCATTTATTCTTTCATTTTCTTTAACCTT
CATAACGAAAAAGCCAAATC

Downstream 100 bases:

>100_bases
TTCCTACTTGTCATCAAAAATACGATGCCTAAGCCATCGTATTTTTATCCCAATAAGCTTGCTGTACTTGGGGTACCTGA
TTGATCTGTGTAATGATTTC

Product: benzoate membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MQKFIRDFTLPAAFAGFVTFLIGISVSSVLVIQAAQILGANTPQITSWFWALGIGIGLSGLILSWKFKYPVATSWSTAGL
ALIIATGSGYSLHEAIGAFLLCGLLTALLGFFGVFQKALAYIPQSLTSAMLAGVLLKFGIAIFGNMQDHWQFIISLLAVY
IVSKRLWPRYCIVITVIAGVMICPFFMEFHLPTLHWELAKPEWITPHFTGSAILGLALPLFVINMASQYLPGIAMIKSYG
YNPNVNQLIGWTGATQTLLAPFGCYTVNIAAISAAVSLDDQVHPDPAKRYIAGISCGFFYILMGLFAATLTSLLMSFPSL
FIVALAGIALFGTISHNIAIAFQEPTDREAALLTFLCSASGIQFFGIGSAFWGLIVGVIVSMVLKTKFKKS

Sequences:

>Translated_391_residues
MQKFIRDFTLPAAFAGFVTFLIGISVSSVLVIQAAQILGANTPQITSWFWALGIGIGLSGLILSWKFKYPVATSWSTAGL
ALIIATGSGYSLHEAIGAFLLCGLLTALLGFFGVFQKALAYIPQSLTSAMLAGVLLKFGIAIFGNMQDHWQFIISLLAVY
IVSKRLWPRYCIVITVIAGVMICPFFMEFHLPTLHWELAKPEWITPHFTGSAILGLALPLFVINMASQYLPGIAMIKSYG
YNPNVNQLIGWTGATQTLLAPFGCYTVNIAAISAAVSLDDQVHPDPAKRYIAGISCGFFYILMGLFAATLTSLLMSFPSL
FIVALAGIALFGTISHNIAIAFQEPTDREAALLTFLCSASGIQFFGIGSAFWGLIVGVIVSMVLKTKFKKS
>Mature_391_residues
MQKFIRDFTLPAAFAGFVTFLIGISVSSVLVIQAAQILGANTPQITSWFWALGIGIGLSGLILSWKFKYPVATSWSTAGL
ALIIATGSGYSLHEAIGAFLLCGLLTALLGFFGVFQKALAYIPQSLTSAMLAGVLLKFGIAIFGNMQDHWQFIISLLAVY
IVSKRLWPRYCIVITVIAGVMICPFFMEFHLPTLHWELAKPEWITPHFTGSAILGLALPLFVINMASQYLPGIAMIKSYG
YNPNVNQLIGWTGATQTLLAPFGCYTVNIAAISAAVSLDDQVHPDPAKRYIAGISCGFFYILMGLFAATLTSLLMSFPSL
FIVALAGIALFGTISHNIAIAFQEPTDREAALLTFLCSASGIQFFGIGSAFWGLIVGVIVSMVLKTKFKKS

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=383, Percent_Identity=39.9477806788512, Blast_Score=273, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 42184; Mature: 42184

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKFIRDFTLPAAFAGFVTFLIGISVSSVLVIQAAQILGANTPQITSWFWALGIGIGLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHH
LILSWKFKYPVATSWSTAGLALIIATGSGYSLHEAIGAFLLCGLLTALLGFFGVFQKALA
HHEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIPQSLTSAMLAGVLLKFGIAIFGNMQDHWQFIISLLAVYIVSKRLWPRYCIVITVIAGV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MICPFFMEFHLPTLHWELAKPEWITPHFTGSAILGLALPLFVINMASQYLPGIAMIKSYG
HHHHHHHHHCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
YNPNVNQLIGWTGATQTLLAPFGCYTVNIAAISAAVSLDDQVHPDPAKRYIAGISCGFFY
CCCCHHHHCCCCCCHHHHHHCCCHHEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ILMGLFAATLTSLLMSFPSLFIVALAGIALFGTISHNIAIAFQEPTDREAALLTFLCSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC
GIQFFGIGSAFWGLIVGVIVSMVLKTKFKKS
CCEEEECHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKFIRDFTLPAAFAGFVTFLIGISVSSVLVIQAAQILGANTPQITSWFWALGIGIGLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHH
LILSWKFKYPVATSWSTAGLALIIATGSGYSLHEAIGAFLLCGLLTALLGFFGVFQKALA
HHEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIPQSLTSAMLAGVLLKFGIAIFGNMQDHWQFIISLLAVYIVSKRLWPRYCIVITVIAGV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MICPFFMEFHLPTLHWELAKPEWITPHFTGSAILGLALPLFVINMASQYLPGIAMIKSYG
HHHHHHHHHCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
YNPNVNQLIGWTGATQTLLAPFGCYTVNIAAISAAVSLDDQVHPDPAKRYIAGISCGFFY
CCCCHHHHCCCCCCHHHHHHCCCHHEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ILMGLFAATLTSLLMSFPSLFIVALAGIALFGTISHNIAIAFQEPTDREAALLTFLCSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC
GIQFFGIGSAFWGLIVGVIVSMVLKTKFKKS
CCEEEECHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]