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The map label for this gene is ycfD [C]

Identifier: 50085072

GI number: 50085072

Start: 1920832

End: 1921998

Strand: Direct

Name: ycfD [C]

Synonym: ACIAD1933

Alternate gene names: 50085072

Gene position: 1920832-1921998 (Clockwise)

Preceding gene: 50085070

Following gene: 50085073

Centisome position: 53.38

GC content: 40.02

Gene sequence:

>1167_bases
ATGTCTAATCCACTTCAGGTCTTAGGCGGAATCACCGCAGAACAATTTTTAAATGAGTATTGGCAAAAGAAACCATTGCT
GGTTCGCAATGCCATGCCTGAAATTATCAATATTCTTGAACCTGATGATGTGAAAGAACTGGCCTTAGAAGAAACAGTCA
GTGCTCGTCTCATTAAGCAAAAAGATAAAGATCCAAACCAGTGGAGTGTCAAATCCTCTCCGTTAATTAAAGGTGATTTT
CAGAAATTACCGAAGCTTTGGACACTTTTAGTTCAAGCAGTAGATCACTACTCTTTTGATCTGGCAGAACTTTGGAAAGA
ATTTCCGTTTATTCCCCAGTGGCGACGAGATGACATCATGGTGTCTTACGCACCCAAAGGTGGCTCAGTAGGAAAACATT
TTGATTTTTACGATGTTTTTTTAGTACAAGGTTACGGGCATCGCCGTTGGCAACTTGGACAAATGTGTGACGAATCTACC
GAATTTGTGCCTGAACAGCCCTTAAAATTACTCCCAGAAATGGATATTCATTTTGATGAAGTGCTCGCACCAGGTGATCT
GCTTTATGTACCACCAGGCTTATCGCATTACGGTGTTGCCGAAGATGACTGTTTAACGTTCTCTTTCGGCTTTCGCATGC
CAAACATTGCGACGATGATGGATCGAGTCAGTGACAAATTTGCCGATAATAGTCTGCTTAAAAATCCGTTATTGGACGTC
GTTCGTGATGAGGTCGCTAAAATTGGTGAAATTACAAGCAATGAATTGGCCTATCTAAAAGCAAAAGTACTGGAACAGTT
ACAGCATTCCAATGATTTTGAACATGCATTGATGTCATTGATGTCTGAACCCAAATATCCAGATAATTTACCAGAAGCAG
ATGAAATAGAAGCAGATGATTTGCTTGAAATTATCGATACTGGATATGAGTTACGCTTAGAACCTGCTTCAAGATTGCTC
TATACATTAGATGATGGGCAGTTATTATTTTGGGCCAATGGTGAAGAGTGCTGCATTTCCGAGCAATTTGAATCGCTCTT
AAAGCAGCTCGCAGATGGAGAAAGCCTGGTATTTGATCAATCATTCAATGATGCAGAGATACTTGAGGATATTGCACAAT
TACTCAATGAGTCAGTTTTAATGTTACTCCCATCTGACGAAGAATAA

Upstream 100 bases:

>100_bases
AAAGTTTGTGCTACTGAAAATTCTAGTTCATGTAAAATATCTATCACCATTACATATCCCTTCAGATTGCGATCTATGAT
CATTTTTATCGAGGCAATTC

Downstream 100 bases:

>100_bases
TCAGCACCAGTACTGAGGATTAAAATAATTCTCAGTACTAACAATTCGTTACTTGAGGTTCTTTCATGTTCTTGGCAACT
TAATTGCAGAACAAAAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSNPLQVLGGITAEQFLNEYWQKKPLLVRNAMPEIINILEPDDVKELALEETVSARLIKQKDKDPNQWSVKSSPLIKGDF
QKLPKLWTLLVQAVDHYSFDLAELWKEFPFIPQWRRDDIMVSYAPKGGSVGKHFDFYDVFLVQGYGHRRWQLGQMCDEST
EFVPEQPLKLLPEMDIHFDEVLAPGDLLYVPPGLSHYGVAEDDCLTFSFGFRMPNIATMMDRVSDKFADNSLLKNPLLDV
VRDEVAKIGEITSNELAYLKAKVLEQLQHSNDFEHALMSLMSEPKYPDNLPEADEIEADDLLEIIDTGYELRLEPASRLL
YTLDDGQLLFWANGEECCISEQFESLLKQLADGESLVFDQSFNDAEILEDIAQLLNESVLMLLPSDEE

Sequences:

>Translated_388_residues
MSNPLQVLGGITAEQFLNEYWQKKPLLVRNAMPEIINILEPDDVKELALEETVSARLIKQKDKDPNQWSVKSSPLIKGDF
QKLPKLWTLLVQAVDHYSFDLAELWKEFPFIPQWRRDDIMVSYAPKGGSVGKHFDFYDVFLVQGYGHRRWQLGQMCDEST
EFVPEQPLKLLPEMDIHFDEVLAPGDLLYVPPGLSHYGVAEDDCLTFSFGFRMPNIATMMDRVSDKFADNSLLKNPLLDV
VRDEVAKIGEITSNELAYLKAKVLEQLQHSNDFEHALMSLMSEPKYPDNLPEADEIEADDLLEIIDTGYELRLEPASRLL
YTLDDGQLLFWANGEECCISEQFESLLKQLADGESLVFDQSFNDAEILEDIAQLLNESVLMLLPSDEE
>Mature_387_residues
SNPLQVLGGITAEQFLNEYWQKKPLLVRNAMPEIINILEPDDVKELALEETVSARLIKQKDKDPNQWSVKSSPLIKGDFQ
KLPKLWTLLVQAVDHYSFDLAELWKEFPFIPQWRRDDIMVSYAPKGGSVGKHFDFYDVFLVQGYGHRRWQLGQMCDESTE
FVPEQPLKLLPEMDIHFDEVLAPGDLLYVPPGLSHYGVAEDDCLTFSFGFRMPNIATMMDRVSDKFADNSLLKNPLLDVV
RDEVAKIGEITSNELAYLKAKVLEQLQHSNDFEHALMSLMSEPKYPDNLPEADEIEADDLLEIIDTGYELRLEPASRLLY
TLDDGQLLFWANGEECCISEQFESLLKQLADGESLVFDQSFNDAEILEDIAQLLNESVLMLLPSDEE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=367, Percent_Identity=30.5177111716621, Blast_Score=173, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 44355; Mature: 44224

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPLQVLGGITAEQFLNEYWQKKPLLVRNAMPEIINILEPDDVKELALEETVSARLIKQ
CCCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KDKDPNQWSVKSSPLIKGDFQKLPKLWTLLVQAVDHYSFDLAELWKEFPFIPQWRRDDIM
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEE
VSYAPKGGSVGKHFDFYDVFLVQGYGHRRWQLGQMCDESTEFVPEQPLKLLPEMDIHFDE
EEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHCCCHHCCCCCCHHHHCCCCCCCHHH
VLAPGDLLYVPPGLSHYGVAEDDCLTFSFGFRMPNIATMMDRVSDKFADNSLLKNPLLDV
HCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
VRDEVAKIGEITSNELAYLKAKVLEQLQHSNDFEHALMSLMSEPKYPDNLPEADEIEADD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LLEIIDTGYELRLEPASRLLYTLDDGQLLFWANGEECCISEQFESLLKQLADGESLVFDQ
HHHHHHCCCEEEECHHHCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC
SFNDAEILEDIAQLLNESVLMLLPSDEE
CCCHHHHHHHHHHHHCCCEEEEECCCCC
>Mature Secondary Structure 
SNPLQVLGGITAEQFLNEYWQKKPLLVRNAMPEIINILEPDDVKELALEETVSARLIKQ
CCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KDKDPNQWSVKSSPLIKGDFQKLPKLWTLLVQAVDHYSFDLAELWKEFPFIPQWRRDDIM
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEE
VSYAPKGGSVGKHFDFYDVFLVQGYGHRRWQLGQMCDESTEFVPEQPLKLLPEMDIHFDE
EEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHCCCHHCCCCCCHHHHCCCCCCCHHH
VLAPGDLLYVPPGLSHYGVAEDDCLTFSFGFRMPNIATMMDRVSDKFADNSLLKNPLLDV
HCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
VRDEVAKIGEITSNELAYLKAKVLEQLQHSNDFEHALMSLMSEPKYPDNLPEADEIEADD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LLEIIDTGYELRLEPASRLLYTLDDGQLLFWANGEECCISEQFESLLKQLADGESLVFDQ
HHHHHHCCCEEEECHHHCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC
SFNDAEILEDIAQLLNESVLMLLPSDEE
CCCHHHHHHHHHHHHCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]