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The map label for this gene is yqhC [H]

Identifier: 50084979

GI number: 50084979

Start: 1840870

End: 1841769

Strand: Direct

Name: yqhC [H]

Synonym: ACIAD1834

Alternate gene names: 50084979

Gene position: 1840870-1841769 (Clockwise)

Preceding gene: 50084976

Following gene: 50084980

Centisome position: 51.15

GC content: 35.0

Gene sequence:

>900_bases
ATGACTTTAATGAATGATCTGAACCCAGTTATAGAAAAGACCAAATCCTTAGCACGTAAAGTTGATGGTCTTGTTAAAAA
TGAAGATTTTCAAACAGAAATCTCAGGTTTTTCTTTACATAGACGTGTCAACAAACAGTCAATACATTGTATTTATGATT
TAGGTCTTGGCGTCATTTTGCAAGGAGAAAAGCAAGTTCTGATTGGTAATGAGATTTTTAGTTATGGGTGTGGACAAACG
ATGCTCACGACCATTGATTTGCCAGCAGTAAGTCGATTAACTCAAGTCTCATACTCAGAGCCTTTTCTTGGAATGATGCT
TAAATTAGATATCGGAATGATTACAGAAATAGCTGGCAGCATGGAGAATATTAACGTTACTTCAAATATCCCATCTTTTT
CAATTGAGCAAATGGATTTAGGACTTATCGAAGCCTTGGATCGTTTAGTGGATTTAGTTGAAGATCCCTCATTGATTTCT
CAAATAGCACCACTTATACAACATGAGATTATTGTCCGACTATTATTAGGTAAACATGGTGACTACCTAAGAAACTTAAT
AAAAATAAGCGTGAGTGAGAAAAATATTTTTAAGGTCATTTCATGGTTAAGAAATAATTTTCTAAATGATGTTCGTGTTG
ATGAGATAGCTGAACAAGCAAACATGACATCGGCAACGTTTAGAAACCATTTTCGCGAAATTACGAGAATGACGCCGTTA
CAATATCAGAAGCAATTAAGATTGCAGGAGGCTCGAAAGTTGATGCTTATGCAATCTATTGAAATAAGAAGAGTGGCTGA
ATCAGTCGGTTATGAAAGTCAGTCTCAATTTACAAGGGAATATGTACGTCTATTCGGGATTACTCCTCAAAAAGATCTAA
AAGAAAATACAGCCAAGTAA

Upstream 100 bases:

>100_bases
ATAAAGATGGGCGCTAGTCATAAACATTTTTGCATTGACTAGTTATTAGAGAGATTTATAGTCTTAAAGAAGCAATTGAG
ATAATAGGGTTTGAAATAGC

Downstream 100 bases:

>100_bases
TGAGTAGACTCTAAAACAGATATGTTTTGATAATGAAAGCTCGAAATAGGCAAACAATATTTAAAATTAGGCAAATTGAA
GAAACGACTTCACCATAGAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTLMNDLNPVIEKTKSLARKVDGLVKNEDFQTEISGFSLHRRVNKQSIHCIYDLGLGVILQGEKQVLIGNEIFSYGCGQT
MLTTIDLPAVSRLTQVSYSEPFLGMMLKLDIGMITEIAGSMENINVTSNIPSFSIEQMDLGLIEALDRLVDLVEDPSLIS
QIAPLIQHEIIVRLLLGKHGDYLRNLIKISVSEKNIFKVISWLRNNFLNDVRVDEIAEQANMTSATFRNHFREITRMTPL
QYQKQLRLQEARKLMLMQSIEIRRVAESVGYESQSQFTREYVRLFGITPQKDLKENTAK

Sequences:

>Translated_299_residues
MTLMNDLNPVIEKTKSLARKVDGLVKNEDFQTEISGFSLHRRVNKQSIHCIYDLGLGVILQGEKQVLIGNEIFSYGCGQT
MLTTIDLPAVSRLTQVSYSEPFLGMMLKLDIGMITEIAGSMENINVTSNIPSFSIEQMDLGLIEALDRLVDLVEDPSLIS
QIAPLIQHEIIVRLLLGKHGDYLRNLIKISVSEKNIFKVISWLRNNFLNDVRVDEIAEQANMTSATFRNHFREITRMTPL
QYQKQLRLQEARKLMLMQSIEIRRVAESVGYESQSQFTREYVRLFGITPQKDLKENTAK
>Mature_298_residues
TLMNDLNPVIEKTKSLARKVDGLVKNEDFQTEISGFSLHRRVNKQSIHCIYDLGLGVILQGEKQVLIGNEIFSYGCGQTM
LTTIDLPAVSRLTQVSYSEPFLGMMLKLDIGMITEIAGSMENINVTSNIPSFSIEQMDLGLIEALDRLVDLVEDPSLISQ
IAPLIQHEIIVRLLLGKHGDYLRNLIKISVSEKNIFKVISWLRNNFLNDVRVDEIAEQANMTSATFRNHFREITRMTPLQ
YQKQLRLQEARKLMLMQSIEIRRVAESVGYESQSQFTREYVRLFGITPQKDLKENTAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=245, Percent_Identity=28.9795918367347, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1786496, Length=77, Percent_Identity=40.2597402597403, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34122; Mature: 33991

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLMNDLNPVIEKTKSLARKVDGLVKNEDFQTEISGFSLHRRVNKQSIHCIYDLGLGVIL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHEECCCCEEE
QGEKQVLIGNEIFSYGCGQTMLTTIDLPAVSRLTQVSYSEPFLGMMLKLDIGMITEIAGS
ECCCEEEECHHHHHCCCCCHHHEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
MENINVTSNIPSFSIEQMDLGLIEALDRLVDLVEDPSLISQIAPLIQHEIIVRLLLGKHG
HHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
DYLRNLIKISVSEKNIFKVISWLRNNFLNDVRVDEIAEQANMTSATFRNHFREITRMTPL
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
QYQKQLRLQEARKLMLMQSIEIRRVAESVGYESQSQFTREYVRLFGITPQKDLKENTAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC
>Mature Secondary Structure 
TLMNDLNPVIEKTKSLARKVDGLVKNEDFQTEISGFSLHRRVNKQSIHCIYDLGLGVIL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHEECCCCEEE
QGEKQVLIGNEIFSYGCGQTMLTTIDLPAVSRLTQVSYSEPFLGMMLKLDIGMITEIAGS
ECCCEEEECHHHHHCCCCCHHHEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
MENINVTSNIPSFSIEQMDLGLIEALDRLVDLVEDPSLISQIAPLIQHEIIVRLLLGKHG
HHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
DYLRNLIKISVSEKNIFKVISWLRNNFLNDVRVDEIAEQANMTSATFRNHFREITRMTPL
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
QYQKQLRLQEARKLMLMQSIEIRRVAESVGYESQSQFTREYVRLFGITPQKDLKENTAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]