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The map label for this gene is csp [H]

Identifier: 50084936

GI number: 50084936

Start: 1794597

End: 1794809

Strand: Direct

Name: csp [H]

Synonym: ACIAD1787

Alternate gene names: 50084936

Gene position: 1794597-1794809 (Clockwise)

Preceding gene: 50084935

Following gene: 50084937

Centisome position: 49.87

GC content: 32.39

Gene sequence:

>213_bases
ATGAGTAATACTATTCAAGGTACAGTAAAATGGTTTAACGAAACTAAAGGTTTTGGTTTCATTAGTTCAGATTCAGGTGA
AGACGTTTTTGCACACTATAGCGAAATTTCAAATAGTGGCTTCAAAACACTTCTAGAAGGTCAACGTGTTGAATTCTTAG
TTGTAAACGGTAAAAAAGGTTTACAAGCAAGCAATATCAGCATTGTAAAATAA

Upstream 100 bases:

>100_bases
CTGCTTTATTTCGTAGTTTTATTTTTAATCCTTCGTTTGTAAAAGATATTTATCAGTTTCATCGTATATTTTTTATGATT
TTTTTAACGAGGATGATTAA

Downstream 100 bases:

>100_bases
GTAAAACTTTAAAAAGTTTTAAAGCCTTATATTTTAAAATATAAGGCTTTTTTTATGAAAATAATTTTATATTAATGTTT
TTATTGAATAAATTAAATTT

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASNISIVK

Sequences:

>Translated_70_residues
MSNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASNISIVK
>Mature_69_residues
SNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASNISIVK

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=61.9047619047619, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=56.0606060606061, Blast_Score=78, Evalue=9e-17,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=53.6231884057971, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1789979, Length=68, Percent_Identity=52.9411764705882, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=50.7462686567164, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=53.7313432835821, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=56.0606060606061, Blast_Score=72, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7675; Mature: 7543

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKG
CCCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCHHHCCCCCEEEEEEECCCC
LQASNISIVK
CEECCEEEEC
>Mature Secondary Structure 
SNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKG
CCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCHHHCCCCCEEEEEEECCCC
LQASNISIVK
CEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]