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The map label for this gene is ynbD [H]

Identifier: 50084824

GI number: 50084824

Start: 1670899

End: 1672263

Strand: Reverse

Name: ynbD [H]

Synonym: ACIAD1667

Alternate gene names: 50084824

Gene position: 1672263-1670899 (Counterclockwise)

Preceding gene: 50084825

Following gene: 50084823

Centisome position: 46.47

GC content: 39.12

Gene sequence:

>1365_bases
ATGCAGCAACAATTACAAAAACAGTCAGGGACATGGAAATGGGGGATATTGTGCCTCGTTATACTTGCGCCCTTTTTCTT
TCTCAGTTATGGCTTTTCCAATCAGTATGCTGCGGGTTTAACACAGGTTCGCAGTATTGTTTTTGAATGGGAACAGTTGA
TTCCTCTTTGGCCTTGGACAATTATTCCCTACTGGTCAATCGATCTTTTTTATGGTCTGTCTTTATTACTTTGCTGGAAT
AAGTTTGAACTCAAACAGCATGCTTTAAGACTATTCACGGCACAACTCATTTCAATCAGTTGCTTCTTACTATTTCCTCT
CAAATTCAGCTTTGAACGCCCAGAACTACATGGTTTTTTTGGTCTCTGGTTTAATATTCTGATGGGTTTTGATAAACCCT
TTAATCAGGCGCCTTCCCTGCATATTGTGTTACTCATCATTTTATGGGATTTTTATCGTCGTCATGTTGCTTCATCATGT
CGATGGGTCGTTGATATTTGGTCATGCTTGATTGGACTATCAGTTTTAACAACTTGGCAGCATCATTTTATTGATATCCC
AACAGGGATAATTGTAGGTGCTTTATGTCTATGGTTTTTTCCACTTTACGTTAAAGCCCCCTATCAAACCCAGATTCATC
AAGTGAGAACAATCAAGCATTTTAAGCTCGCTAGTTATTATCTGCTAGGTGCAATTGTGCTATGTATCATCGCTTGGCAA
ATCCGAAATTGGGCGCTCTGGTTATTTTATCCTGCTTTAAGTTTATTTCTGGTGAGTCTGGCCTATATTTTGGTTCGACC
TCATTTTTTCCAAAAGCAAGCTAACGGAAAAATGACCATAGCAGCACTTATTTTATTTGGACCATATCTAGTGTTTGCTT
GGCTTAACAGTCGGCTATGGACAAAGAAACATCCTGAAGATTCATTGATATTTGAGCATAAGCATAGTCAGCTAAAAATT
TTTCTTGGTCGTATTCCTTCACAAGCGCACACGACAAAATATACTGCAATTTTTGATTGTTGTGCTGAACTGCCCGTTGC
TACACAAAGTACCTATCAGCAATATTTGACCCTTGATCTGATTGCTGTACAAGCAGATCAACTCCAGTACGCAGTTGAAG
CATTTGAAAAACTGATTCAACAGTCACAACAACATGCACACCCTTCAATTCTTATTTATTGCGCTTTGGGATATTCCCGT
AGTACAGCAGTTTTATGCGCTTGGCTGATTAAGAACCAACAGGCAGTAAATATCAAAAATGCCCTACAATTCATTCGTGT
TGCACGCCCATGGGTTAAGCTTAGCGAACAGCAAATTGAACAGATTAACCTTTATCAGCTCAGACTTATGGAGTCTGTAC
CATGA

Upstream 100 bases:

>100_bases
GGTTGAACAGGCTGGATTTAAAAAGATTGATCAATATATTGATCAATTCGGAATCTTTACTGTTTCAATTGCACAAAAAA
TATAATTTAAGGTTGATTGC

Downstream 100 bases:

>100_bases
ATATGCATTGGATTGTGCTATCACGTTTACTGGGTCAGACAAATTACCTTTTACTTTCTGGCTATGTTGCATTTATTGTA
TCTACCACCTTGTTATTGTT

Product: phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MQQQLQKQSGTWKWGILCLVILAPFFFLSYGFSNQYAAGLTQVRSIVFEWEQLIPLWPWTIIPYWSIDLFYGLSLLLCWN
KFELKQHALRLFTAQLISISCFLLFPLKFSFERPELHGFFGLWFNILMGFDKPFNQAPSLHIVLLIILWDFYRRHVASSC
RWVVDIWSCLIGLSVLTTWQHHFIDIPTGIIVGALCLWFFPLYVKAPYQTQIHQVRTIKHFKLASYYLLGAIVLCIIAWQ
IRNWALWLFYPALSLFLVSLAYILVRPHFFQKQANGKMTIAALILFGPYLVFAWLNSRLWTKKHPEDSLIFEHKHSQLKI
FLGRIPSQAHTTKYTAIFDCCAELPVATQSTYQQYLTLDLIAVQADQLQYAVEAFEKLIQQSQQHAHPSILIYCALGYSR
STAVLCAWLIKNQQAVNIKNALQFIRVARPWVKLSEQQIEQINLYQLRLMESVP

Sequences:

>Translated_454_residues
MQQQLQKQSGTWKWGILCLVILAPFFFLSYGFSNQYAAGLTQVRSIVFEWEQLIPLWPWTIIPYWSIDLFYGLSLLLCWN
KFELKQHALRLFTAQLISISCFLLFPLKFSFERPELHGFFGLWFNILMGFDKPFNQAPSLHIVLLIILWDFYRRHVASSC
RWVVDIWSCLIGLSVLTTWQHHFIDIPTGIIVGALCLWFFPLYVKAPYQTQIHQVRTIKHFKLASYYLLGAIVLCIIAWQ
IRNWALWLFYPALSLFLVSLAYILVRPHFFQKQANGKMTIAALILFGPYLVFAWLNSRLWTKKHPEDSLIFEHKHSQLKI
FLGRIPSQAHTTKYTAIFDCCAELPVATQSTYQQYLTLDLIAVQADQLQYAVEAFEKLIQQSQQHAHPSILIYCALGYSR
STAVLCAWLIKNQQAVNIKNALQFIRVARPWVKLSEQQIEQINLYQLRLMESVP
>Mature_454_residues
MQQQLQKQSGTWKWGILCLVILAPFFFLSYGFSNQYAAGLTQVRSIVFEWEQLIPLWPWTIIPYWSIDLFYGLSLLLCWN
KFELKQHALRLFTAQLISISCFLLFPLKFSFERPELHGFFGLWFNILMGFDKPFNQAPSLHIVLLIILWDFYRRHVASSC
RWVVDIWSCLIGLSVLTTWQHHFIDIPTGIIVGALCLWFFPLYVKAPYQTQIHQVRTIKHFKLASYYLLGAIVLCIIAWQ
IRNWALWLFYPALSLFLVSLAYILVRPHFFQKQANGKMTIAALILFGPYLVFAWLNSRLWTKKHPEDSLIFEHKHSQLKI
FLGRIPSQAHTTKYTAIFDCCAELPVATQSTYQQYLTLDLIAVQADQLQYAVEAFEKLIQQSQQHAHPSILIYCALGYSR
STAVLCAWLIKNQQAVNIKNALQFIRVARPWVKLSEQQIEQINLYQLRLMESVP

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=432, Percent_Identity=35.1851851851852, Blast_Score=242, Evalue=3e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 53064; Mature: 53064

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]