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The map label for this gene is ltrA [H]

Identifier: 50084813

GI number: 50084813

Start: 1655794

End: 1656711

Strand: Reverse

Name: ltrA [H]

Synonym: ACIAD1656

Alternate gene names: 50084813

Gene position: 1656711-1655794 (Counterclockwise)

Preceding gene: 50084814

Following gene: 50084810

Centisome position: 46.04

GC content: 40.74

Gene sequence:

>918_bases
GTGCAACGGAAAACCATCATGTTTACAGATTTAGACGATTTTTACTGTTTCGCCTTAGTAGTTGAACATGGTGGATTCAG
TGCAGCAGAACGTGCAACTGATATTCCAAAATCCAAACTGAGCCGTCGTGTGTATAATCTTGAAGAACGTTTGGGTGTTC
GTTTAATCCAGCGAAGTTCTCGACATTTTGCAGTCACCGATATTGGTATGAATATTTATCGGCATGCTCAAGTCATGATG
AATGCAGCTCAAGCTGCACACGATCTGGTCGATCATTTGAGCATTAAACCTCGCGGTGTGATCAAAGTCAGTGTACCAGT
AGATATTGCTCAAAATCAGATGTCTAAGCTCCTACCAGAATTTTTAAAATTATATCCAGAAATTCGGGTACAGTTGATGA
TTAGTAATCGTCGCGTAGATATTGTCAACGAAGGGATTGATATCGCCTTAAGAGTACGCTCCAAACTTGATGATGATCCG
AGTCTGGTTTTACGTCAATTTGCGCAGATAGAACAGCACCTGTTTGCAAGTCAGGCCTATTTGAATGAATTTGGTTCGGT
CAAAATTCCAGATGATTTACCTCAACATCGCTTTTTAAGCCTTTCCGATGATCATCTGGATCAGCAATTCACGCTTTATG
ATCAAAACAATCAACTACATAAAGTCAAAGTGAATCCAGTGGTCATGGCATCAAATCTTTTAATGCTTGCTCAACTGGCT
TCACAAAATTGCGGTATCGCACTTTTGCCAGACACAATCGCCTGTGATTATATAAAAAGTGGTGAATTGGTACGCGTTCT
ACCTGAATGGAAAGCACCTCATGGTATTTTTCACGCAGTATACCCATCACGTCGTGGACTTTTACCCGCAGTTCGTGTGT
TTATCGACTTTCTAGTCGAACATTTGACAGAACGTTAA

Upstream 100 bases:

>100_bases
CTATTTGTTTAATTTGACTAAATTACTCAGTTTTAACATAGCATGCTTAAATTATTAGTTATAATCTCAGGATATTTATA
GTTTTTAATTTTTTGCTGCA

Downstream 100 bases:

>100_bases
TTCTAAATAAAAAAAGCTTATCCTGTTACAGATAAGCTGGAATTTTCAAAGAAACTTACAGCACTTTGAATACGAACTCA
TATTACTCACTTTTTGATGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MQRKTIMFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVTDIGMNIYRHAQVMM
NAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPEFLKLYPEIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDP
SLVLRQFAQIEQHLFASQAYLNEFGSVKIPDDLPQHRFLSLSDDHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLA
SQNCGIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYPSRRGLLPAVRVFIDFLVEHLTER

Sequences:

>Translated_305_residues
MQRKTIMFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVTDIGMNIYRHAQVMM
NAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPEFLKLYPEIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDP
SLVLRQFAQIEQHLFASQAYLNEFGSVKIPDDLPQHRFLSLSDDHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLA
SQNCGIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYPSRRGLLPAVRVFIDFLVEHLTER
>Mature_305_residues
MQRKTIMFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVTDIGMNIYRHAQVMM
NAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPEFLKLYPEIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDP
SLVLRQFAQIEQHLFASQAYLNEFGSVKIPDDLPQHRFLSLSDDHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLA
SQNCGIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYPSRRGLLPAVRVFIDFLVEHLTER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=29.4520547945205, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=27.5510204081633, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=28.6195286195286, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=28.2392026578073, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=24.7457627118644, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787128, Length=300, Percent_Identity=25.3333333333333, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=25.8503401360544, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788706, Length=171, Percent_Identity=25.7309941520468, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=128, Percent_Identity=25.78125, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34806; Mature: 34806

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKTIMFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSS
CCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
RHFAVTDIGMNIYRHAQVMMNAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPE
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH
FLKLYPEIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDPSLVLRQFAQIEQHLFASQAY
HHHHHHHHEEEEEEECCEEEEECCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LNEFGSVKIPDDLPQHRFLSLSDDHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLA
HHHCCCEECCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEHHHHHHHHHHH
SQNCGIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYPSRRGLLPAVRVFIDFLVE
CCCCCEEECCCHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
HLTER
HHHCC
>Mature Secondary Structure
MQRKTIMFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSS
CCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
RHFAVTDIGMNIYRHAQVMMNAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPE
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH
FLKLYPEIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDPSLVLRQFAQIEQHLFASQAY
HHHHHHHHEEEEEEECCEEEEECCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LNEFGSVKIPDDLPQHRFLSLSDDHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLA
HHHCCCEECCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCEEEHHHHHHHHHHH
SQNCGIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYPSRRGLLPAVRVFIDFLVE
CCCCCEEECCCHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
HLTER
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]