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The map label for this gene is ydcN [C]

Identifier: 50084796

GI number: 50084796

Start: 1633616

End: 1634188

Strand: Reverse

Name: ydcN [C]

Synonym: ACIAD1638

Alternate gene names: 50084796

Gene position: 1634188-1633616 (Counterclockwise)

Preceding gene: 50084800

Following gene: 50084795

Centisome position: 45.41

GC content: 40.84

Gene sequence:

>573_bases
CTGATGGATATAAATCAACACCTCTCACAGCGTATTAAACAGCTTCGCTTGGAGCGAGGCTATACGCTAGATGAACTCGC
AAATCGTAGTCATGTAAGTCGCGCGATGATTTCAATGATTGAGCGTGCAACAACCAACCCGACAGCCGTAGTTTTAGAAA
AACTTGCTGTAGCATTAGATATCACACTTGTAAGCTTATTTAATATTCAAACAAGTGATTTAAAAACCCAACCATATACT
CGCTATTCTGAACAGCCTGTGTGGACAGATCCCGAATCAGGTTATACCAGACGTGTTATATCGCCTTTAGGCGTTGAATC
ACCCATTCAACTTATTGAAGTCGATTTTCCAGCATTCGCTAAAGTCACCTTTGAAACTCCAATTCGACATTCTGTGCAAA
AGCAACAAATCTGGATCATTAGTGGTTGTATGACGATTTTAGTCGCTGGATGTACCTTTCATTTAAGTACAGGTGATTGT
TTGGCTATGGATTTAGAAGGTCCAATTATATTTAGTAATCCTCACCCGACCAGCACGCGCTACATTCTAGCCATTGCAAA
TCCCTCTGCTTAA

Upstream 100 bases:

>100_bases
AAATTTTTAATAGAATATTCATATGAAGAATTAAAATTTCAAAAAAATTCCAATATAGAAGAAAAAATTATAGTATAATA
GAAAAAACTTTCTCTTATAG

Downstream 100 bases:

>100_bases
ATGATGTAGCTGAAAATTACGTTTAATCGCATTTATTTTAATTAGGACTTTTCTGGCATGTTTTCTCCATCCACTACAAC
CTTATTTCGTTTTGTTGAAT

Product: transcription regulator protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Transcription Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MMDINQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALDITLVSLFNIQTSDLKTQPYT
RYSEQPVWTDPESGYTRRVISPLGVESPIQLIEVDFPAFAKVTFETPIRHSVQKQQIWIISGCMTILVAGCTFHLSTGDC
LAMDLEGPIIFSNPHPTSTRYILAIANPSA

Sequences:

>Translated_190_residues
MMDINQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALDITLVSLFNIQTSDLKTQPYT
RYSEQPVWTDPESGYTRRVISPLGVESPIQLIEVDFPAFAKVTFETPIRHSVQKQQIWIISGCMTILVAGCTFHLSTGDC
LAMDLEGPIIFSNPHPTSTRYILAIANPSA
>Mature_190_residues
MMDINQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALDITLVSLFNIQTSDLKTQPYT
RYSEQPVWTDPESGYTRRVISPLGVESPIQLIEVDFPAFAKVTFETPIRHSVQKQQIWIISGCMTILVAGCTFHLSTGDC
LAMDLEGPIIFSNPHPTSTRYILAIANPSA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21273; Mature: 21273

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDINQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALD
CCCHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ITLVSLFNIQTSDLKTQPYTRYSEQPVWTDPESGYTRRVISPLGVESPIQLIEVDFPAFA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCEE
KVTFETPIRHSVQKQQIWIISGCMTILVAGCTFHLSTGDCLAMDLEGPIIFSNPHPTSTR
EEEECCCHHHHHHHHHEEEHHHHHHHHHHHCEEEECCCCEEEEECCCCEEECCCCCCCCE
YILAIANPSA
EEEEEECCCC
>Mature Secondary Structure
MMDINQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALD
CCCHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ITLVSLFNIQTSDLKTQPYTRYSEQPVWTDPESGYTRRVISPLGVESPIQLIEVDFPAFA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCEE
KVTFETPIRHSVQKQQIWIISGCMTILVAGCTFHLSTGDCLAMDLEGPIIFSNPHPTSTR
EEEECCCHHHHHHHHHEEEHHHHHHHHHHHCEEEECCCCEEEEECCCCEEECCCCCCCCE
YILAIANPSA
EEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA