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The map label for this gene is exbD [H]

Identifier: 50084696

GI number: 50084696

Start: 1529025

End: 1529429

Strand: Direct

Name: exbD [H]

Synonym: ACIAD1530

Alternate gene names: 50084696

Gene position: 1529025-1529429 (Clockwise)

Preceding gene: 50084695

Following gene: 50084699

Centisome position: 42.49

GC content: 36.54

Gene sequence:

>405_bases
ATGGCAATTTCTACTTCTGAACAAGATGATGTTGTCAGTGAAATTAATATTACGCCGTTAGTCGATGTCATGTTAGTTTT
ACTCATCGTATTCATTGTGACAGCTCCTTTATTAACAAATACCGTGAAAGTAAACTTACCCAAGGCTGCTCCAACTCAAT
CGACAGATCAAAACAAAGCTGTGGTGATTAGTGTAAATCCACAAGGTGAAATATTCCTTGATAAGGATAAGGTGACACTT
GCGAACTTTGAACAAGAAATAAAGTCACGCAAAAGCAGTAACCCTAAATTAGCATTAAATTTAAATGCTGATGAGACGAT
CCCGTATGGAACAGTCGCAAAATTATTGGCAAGTATTGAACGTGTAGGTGTAGATAAACTCTCTGTGATTACAGTGCCTA
AATAA

Upstream 100 bases:

>100_bases
CAGGATTTCAATTACCAACTGCTAAAAAAGGTACCATTGGTAATTCGGCGGTTAAAGATAATTCCACTAAGGAAGTCAAA
GAAAAAGGAGTGTTTGCATA

Downstream 100 bases:

>100_bases
TTATGTCTCCATAAAAAAAGCTGCTTCGGCAGCTTTTTTTATATAGTGAGTTTACAGATGAGTATTAAGCTTTCCAGAGT
TTCTCAAATCGCCAAGTTGG

Product: biopolymer transport protein (ExbD-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQSTDQNKAVVISVNPQGEIFLDKDKVTL
ANFEQEIKSRKSSNPKLALNLNADETIPYGTVAKLLASIERVGVDKLSVITVPK

Sequences:

>Translated_134_residues
MAISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQSTDQNKAVVISVNPQGEIFLDKDKVTL
ANFEQEIKSRKSSNPKLALNLNADETIPYGTVAKLLASIERVGVDKLSVITVPK
>Mature_133_residues
AISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQSTDQNKAVVISVNPQGEIFLDKDKVTLA
NFEQEIKSRKSSNPKLALNLNADETIPYGTVAKLLASIERVGVDKLSVITVPK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=119, Percent_Identity=34.453781512605, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1786959, Length=131, Percent_Identity=36.6412213740458, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14468; Mature: 14337

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQSTDQNKA
CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCE
VVISVNPQGEIFLDKDKVTLANFEQEIKSRKSSNPKLALNLNADETIPYGTVAKLLASIE
EEEEECCCCCEEEECCCEEEHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
RVGVDKLSVITVPK
HCCCCCEEEEECCC
>Mature Secondary Structure 
AISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQSTDQNKA
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCE
VVISVNPQGEIFLDKDKVTLANFEQEIKSRKSSNPKLALNLNADETIPYGTVAKLLASIE
EEEEECCCCCEEEECCCEEEHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
RVGVDKLSVITVPK
HCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10689178; 10984043 [H]