Click here to switch to the map view.

The map label for this gene is csrA

Identifier: 50084437

GI number: 50084437

Start: 1249392

End: 1249604

Strand: Reverse

Name: csrA

Synonym: ACIAD1251

Alternate gene names: 50084437

Gene position: 1249604-1249392 (Counterclockwise)

Preceding gene: 50084438

Following gene: 50084436

Centisome position: 34.72

GC content: 42.72

Gene sequence:

>213_bases
ATGCTGATTCTGACCCGTCGTGTCGGGGAAACATTAATGATTGGGGATCAAGTCAGTGTTACTGTGCTTGGTGTTAAAGG
TAATCAGGTTCGTATTGGTGTGAATGCTCCGAAAGAAGTCTCTGTTCATCGTGAAGAGATTTATCAACGTATTCAACACG
AACGTGCAATGCATGTGATCCTAGCCAAAATAATGGACAGTACTTCCCTCTAA

Upstream 100 bases:

>100_bases
CTCATTTTCTAATAATTCTGTTAAAATTCTCTCAATTCCGAGGTTGTGTTTTCATTTTTGAAAAACTATCGCAGGTTTAG
CATTTTGCAAGGAGATAAAC

Downstream 100 bases:

>100_bases
AGATAACGTAACGTTAACTTTGGAGATCCAAGAAATGGCCAAACGTTTTAGTCCTGAATTTAAACAGCAAGCAATTGATT
ATGCACTTTCAAACTCACAC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MLILTRRVGETLMIGDQVSVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQHERAMHVILAKIMDSTSL

Sequences:

>Translated_70_residues
MLILTRRVGETLMIGDQVSVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQHERAMHVILAKIMDSTSL
>Mature_70_residues
MLILTRRVGETLMIGDQVSVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQHERAMHVILAKIMDSTSL

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=58, Percent_Identity=87.9310344827586, Blast_Score=105, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_ACIAD (Q6FCT4)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_045947.1
- ProteinModelPortal:   Q6FCT4
- SMR:   Q6FCT4
- STRING:   Q6FCT4
- GeneID:   2880137
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD1251
- NMPDR:   fig|62977.3.peg.320
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- PhylomeDB:   Q6FCT4
- BioCyc:   ASP62977:ACIAD1251-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7866; Mature: 7866

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRVGETLMIGDQVSVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQHERAMHVI
CEEEECCCCCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
LAKIMDSTSL
HHHHHHCCCC
>Mature Secondary Structure
MLILTRRVGETLMIGDQVSVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQHERAMHVI
CEEEECCCCCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
LAKIMDSTSL
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA