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The map label for this gene is yjdF [H]

Identifier: 50084406

GI number: 50084406

Start: 1221290

End: 1221922

Strand: Reverse

Name: yjdF [H]

Synonym: ACIAD1217

Alternate gene names: 50084406

Gene position: 1221922-1221290 (Counterclockwise)

Preceding gene: 50084407

Following gene: 50084398

Centisome position: 33.96

GC content: 36.18

Gene sequence:

>633_bases
ATGATTGAGAAAAAATTTACACTTAAACACTGGCTAGCTCTTTTGCTTATTTTTATCACAATCGTCATAGCCAGTATCCA
GCCTTTAGAATACGAATCGTATCTACTGCACCAAGTGGGTACAGTGTTTATGCTGATCGTCCTGTTTATAACGTTCAAAC
GGATCGGTTTAGATTTTTCCAGTTTTAGCTTGTATTTGGGTTTTTTATTTATCCATATCATCGCCGCGCATTATTTATAT
TCCTATGTACCTTATAATGAATGGATAAAAACCTTAGGTCATTTTGATTTAAATCAATTCTTTGGCTGGCAACGCAATAT
GTATGATCGCTTAGTACATTTTGCATATGGTTTTTTACTCTATCCATTTTTTTATCGATGCTTTCAAGTCTGCTTTCCAG
ACTCTCGACCAAAAACCATTTTCTTATTGGTTCTACAGTTCGTTATGGCTTCCAGCATGGTTTATGAATTAATCGAATGG
GTAATTGCCATTGGCATGTCACCAGACGCTGCTGAAAAATATAATGGTCAGCAAGGTGATCTATGGGATGCACATAAAGA
TATGCTTATGGCGACGATTGGCACTCTTATGTTCGGTTTGTTGCAATTACTAGGCAATAAAAAGCACTCTTAA

Upstream 100 bases:

>100_bases
TTGATCAATAAAATTTAATCTGAATCAGTTAAACTAGAGCGGAATCATTTTAAATGGTTCCGCTTTTTTATACTCATTTC
ATACATAACGAAGAATCTCA

Downstream 100 bases:

>100_bases
TCGAGTGCTTTAGTATTTAGATGAGAAAAATTAAATTTTAGGATCGCGCATCTGAACCAAATGACTATTTGCGTTCACCA
GACTTTCAACCACTTTATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MIEKKFTLKHWLALLLIFITIVIASIQPLEYESYLLHQVGTVFMLIVLFITFKRIGLDFSSFSLYLGFLFIHIIAAHYLY
SYVPYNEWIKTLGHFDLNQFFGWQRNMYDRLVHFAYGFLLYPFFYRCFQVCFPDSRPKTIFLLVLQFVMASSMVYELIEW
VIAIGMSPDAAEKYNGQQGDLWDAHKDMLMATIGTLMFGLLQLLGNKKHS

Sequences:

>Translated_210_residues
MIEKKFTLKHWLALLLIFITIVIASIQPLEYESYLLHQVGTVFMLIVLFITFKRIGLDFSSFSLYLGFLFIHIIAAHYLY
SYVPYNEWIKTLGHFDLNQFFGWQRNMYDRLVHFAYGFLLYPFFYRCFQVCFPDSRPKTIFLLVLQFVMASSMVYELIEW
VIAIGMSPDAAEKYNGQQGDLWDAHKDMLMATIGTLMFGLLQLLGNKKHS
>Mature_210_residues
MIEKKFTLKHWLALLLIFITIVIASIQPLEYESYLLHQVGTVFMLIVLFITFKRIGLDFSSFSLYLGFLFIHIIAAHYLY
SYVPYNEWIKTLGHFDLNQFFGWQRNMYDRLVHFAYGFLLYPFFYRCFQVCFPDSRPKTIFLLVLQFVMASSMVYELIEW
VIAIGMSPDAAEKYNGQQGDLWDAHKDMLMATIGTLMFGLLQLLGNKKHS

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=185, Percent_Identity=28.6486486486486, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 24708; Mature: 24708

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKKFTLKHWLALLLIFITIVIASIQPLEYESYLLHQVGTVFMLIVLFITFKRIGLDFS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SFSLYLGFLFIHIIAAHYLYSYVPYNEWIKTLGHFDLNQFFGWQRNMYDRLVHFAYGFLL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHH
YPFFYRCFQVCFPDSRPKTIFLLVLQFVMASSMVYELIEWVIAIGMSPDAAEKYNGQQGD
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
LWDAHKDMLMATIGTLMFGLLQLLGNKKHS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIEKKFTLKHWLALLLIFITIVIASIQPLEYESYLLHQVGTVFMLIVLFITFKRIGLDFS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SFSLYLGFLFIHIIAAHYLYSYVPYNEWIKTLGHFDLNQFFGWQRNMYDRLVHFAYGFLL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHH
YPFFYRCFQVCFPDSRPKTIFLLVLQFVMASSMVYELIEWVIAIGMSPDAAEKYNGQQGD
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
LWDAHKDMLMATIGTLMFGLLQLLGNKKHS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]