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The map label for this gene is yddE [C]

Identifier: 50084381

GI number: 50084381

Start: 1191486

End: 1192316

Strand: Direct

Name: yddE [C]

Synonym: ACIAD1192

Alternate gene names: 50084381

Gene position: 1191486-1192316 (Clockwise)

Preceding gene: 50084380

Following gene: 50084382

Centisome position: 33.11

GC content: 40.19

Gene sequence:

>831_bases
ATGAAAATGTATCAGGTTGATGCCTTCACTCAGCACTTATTTAAAGGCAATCCAGCAGCAGTAATTATTGTGCAGGATTG
GCTGGATAATGCATTGATGCAGTCGATTGCACTCGAAAATAATCTATCAGAAACTGCTTTTGTTAAAGTTCGAGATCATG
AAAATTATGAAATCCGCTGGTTTTCACCAACGAATGAAGTCGCGTTTTGTGGACATGCGACCTTGGCTAGTGCATTCGTA
TTGTTTAAGGATTTTACATCTGCCAAAACCATTCAGTTTCATGTAAAAAATCTGGGTGTATTTATTGTGACTCAGGCACA
AGACGGAAAAATCCTGATGAATTTTCCTGTGCGTCGTGCCCAGCGTTTAGATGAATATCCTACAATTCTAGATGAAGCAC
TGCATAAACCAATTAAAGCGGTATATTTAAACCCTCAGGCTTATATTGTTGAATACGAATCTGTTCAGGATGTACTTGAT
GAGCAACCAGATTTGGTTAAATTAAAATCTTTAGGGCAATTGCGTACCGCCGTTACAGCCTCAGATGCGATGCTGGACGT
TGCGATTACCGCAACTAATCTGGGGTCTTATGATTGTGTATCACGGTATTTCGCCCCAGCAATTGGAATCAATGAAGATC
CTGTGACAGGTTCTATTCACACCGCGATTGTCCCTTTGTGGGCAGAAAAGCTGAATAAAACCGAATTAATTGCTTATCAG
GCATCAAGCCGTGGTGGAGAGTTGTATTGCCGTATGCTCGATAATGAGCGGATTGAAATTTCAGGCTATGCTGTTTTATA
CATGCAGAGTGAGGTTTATTTGAATATTTAA

Upstream 100 bases:

>100_bases
TCTAGAGCTTTTTTCTGTGCTGGTTTTTTTAAAAATATTGTATCTGTTATTTTACTTCATAATTGCGAAAATAAACTAAA
ACAAACAAGAGATCATATTC

Downstream 100 bases:

>100_bases
AAATCAGATAAAATATAAGTGAACTTAAACATACAGTTTGGCCATGTATTTAAGTTCTACTTAAGTGTTACTATGCGGTT
CAGTGTTAAAATTAATAAGA

Product: epimerase, PhzC/PhzF-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MKMYQVDAFTQHLFKGNPAAVIIVQDWLDNALMQSIALENNLSETAFVKVRDHENYEIRWFSPTNEVAFCGHATLASAFV
LFKDFTSAKTIQFHVKNLGVFIVTQAQDGKILMNFPVRRAQRLDEYPTILDEALHKPIKAVYLNPQAYIVEYESVQDVLD
EQPDLVKLKSLGQLRTAVTASDAMLDVAITATNLGSYDCVSRYFAPAIGINEDPVTGSIHTAIVPLWAEKLNKTELIAYQ
ASSRGGELYCRMLDNERIEISGYAVLYMQSEVYLNI

Sequences:

>Translated_276_residues
MKMYQVDAFTQHLFKGNPAAVIIVQDWLDNALMQSIALENNLSETAFVKVRDHENYEIRWFSPTNEVAFCGHATLASAFV
LFKDFTSAKTIQFHVKNLGVFIVTQAQDGKILMNFPVRRAQRLDEYPTILDEALHKPIKAVYLNPQAYIVEYESVQDVLD
EQPDLVKLKSLGQLRTAVTASDAMLDVAITATNLGSYDCVSRYFAPAIGINEDPVTGSIHTAIVPLWAEKLNKTELIAYQ
ASSRGGELYCRMLDNERIEISGYAVLYMQSEVYLNI
>Mature_276_residues
MKMYQVDAFTQHLFKGNPAAVIIVQDWLDNALMQSIALENNLSETAFVKVRDHENYEIRWFSPTNEVAFCGHATLASAFV
LFKDFTSAKTIQFHVKNLGVFIVTQAQDGKILMNFPVRRAQRLDEYPTILDEALHKPIKAVYLNPQAYIVEYESVQDVLD
EQPDLVKLKSLGQLRTAVTASDAMLDVAITATNLGSYDCVSRYFAPAIGINEDPVTGSIHTAIVPLWAEKLNKTELIAYQ
ASSRGGELYCRMLDNERIEISGYAVLYMQSEVYLNI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=288, Percent_Identity=31.25, Blast_Score=148, Evalue=5e-36,
Organism=Homo sapiens, GI74316009, Length=254, Percent_Identity=30.7086614173228, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI1787737, Length=299, Percent_Identity=28.7625418060201, Blast_Score=93, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17542160, Length=312, Percent_Identity=30.4487179487179, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17542154, Length=312, Percent_Identity=30.4487179487179, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17542158, Length=311, Percent_Identity=28.2958199356913, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17542152, Length=311, Percent_Identity=28.2958199356913, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321818, Length=261, Percent_Identity=29.5019157088123, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31068; Mature: 31068

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMYQVDAFTQHLFKGNPAAVIIVQDWLDNALMQSIALENNLSETAFVKVRDHENYEIRW
CCEEEHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEE
FSPTNEVAFCGHATLASAFVLFKDFTSAKTIQFHVKNLGVFIVTQAQDGKILMNFPVRRA
ECCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCHHH
QRLDEYPTILDEALHKPIKAVYLNPQAYIVEYESVQDVLDEQPDLVKLKSLGQLRTAVTA
HHHHCCHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
SDAMLDVAITATNLGSYDCVSRYFAPAIGINEDPVTGSIHTAIVPLWAEKLNKTELIAYQ
CCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
ASSRGGELYCRMLDNERIEISGYAVLYMQSEVYLNI
CCCCCCEEEEEEECCCEEEEEEEEEEEEEEEEEEEC
>Mature Secondary Structure
MKMYQVDAFTQHLFKGNPAAVIIVQDWLDNALMQSIALENNLSETAFVKVRDHENYEIRW
CCEEEHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEE
FSPTNEVAFCGHATLASAFVLFKDFTSAKTIQFHVKNLGVFIVTQAQDGKILMNFPVRRA
ECCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCCEEEEECCCHHH
QRLDEYPTILDEALHKPIKAVYLNPQAYIVEYESVQDVLDEQPDLVKLKSLGQLRTAVTA
HHHHCCHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
SDAMLDVAITATNLGSYDCVSRYFAPAIGINEDPVTGSIHTAIVPLWAEKLNKTELIAYQ
CCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
ASSRGGELYCRMLDNERIEISGYAVLYMQSEVYLNI
CCCCCCEEEEEEECCCEEEEEEEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]