Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 50084369

GI number: 50084369

Start: 1175805

End: 1177058

Strand: Reverse

Name: ydaM [H]

Synonym: ACIAD1178

Alternate gene names: 50084369

Gene position: 1177058-1175805 (Counterclockwise)

Preceding gene: 50084370

Following gene: 50084368

Centisome position: 32.71

GC content: 39.95

Gene sequence:

>1254_bases
ATGGAACCAATTGATATTCTCTTTCTGTTTGGCTTTTTAGGTATCTGGATTCCGCAAACCTTCTGGGCGTGGCTCAGTTT
TCAGGCATGGAAATATTCTAAAACAGCAGAAAAAGAACTCCAAAACCTTCCTGTTCCCGAGAGATGGCCATTTCTAAGTG
TTCTGATTCCTGCCTACAATGAGGGTGTGGTCATTGAAGATACGCTTCATGCAATTGCTGGACAAGACTATCCTGATCAT
GCCTACGAAGTGCTATTAATTAATGATGGTTCTAAAGACAATACGCTTGAAATTGCTGAGCGAATGGCAAAGATCTACCC
ATGTATCAAAATTGTCAATGTGCCAAAAGGCATGGGAGGCAAAGGTAAATCCCGAACACTCAATAATGGATTGCCCCATG
CAAAAGGTGAACTGATAGTCGTATATGATGCAGATAGTACACCAGAACCTAATTGTGTGCGGCTACTGGCACAAACGCTT
CTTGCCGACGCTAAACTTGTTGCAGTGAATGGCAAAGTACGTACACGCAATTGGCAAGACAGCATACTGACCCATTTTAT
TGCCATTGAATTCATTTTCTTTCAGTGGATATTTCAGGGAGGACGCTGGCAACGTTTTGAATTATCCACCCTGATGGGAA
CCAATTATGTTATTTGGCGTGAAGCATTAGAAACACTTGGAGGTTTTGATGAAAAATCATTAGTTGATGATACAGAAATG
AGTTTTCGGATTTTTCTTGGCACAAAGCGAATTAAATGGGTTCCTTATGCTATTGGCTGGCAACAAGATCCCCCCTCTTT
GCAAGTCTTTGTTAAACAACGTTCACGTTGGACTCAAGGCAATTTCTATGTCACTCACAAATATCTTCCTGTCGCATTAA
AAAACCCTTATCCCATCGGGATTGAAATTTTTAATAACATCATGTGCTATATCCTGTTTGTCCCTGCATTATTGTGGAGT
CATATTACCTTAACGCTTGGTCTACTAGATATCGCAGGTGTAAGTGTCCCTGGCCCATTCACACTCCTGTGGCTCTTATC
ATTTTGCTTATATGTTGCACAAATGTGGTTTACGCTCTCTTTAGAGAAAGCCCCCAGACCGCTCTATTTCTATTCTGTGA
TTTCATATATCAGCTATTCACAAATATTTCTTTTTATTGTTTTTAAAGCTGCCTATGAAATGATCAAAAATAAGATACAA
GGCAACTCACTGCAATGGTATAAAACAGAACGGAGTAAAGAGAAGAAAAAATGA

Upstream 100 bases:

>100_bases
TTGAGTACCTTCGGTAGCTCAATCTCCTGGATTTCATTACTACTCGGCGGTGTCCTGCTTCTGATACTGGTTATTTCAAT
TATTCGCAGGATAAGAAAAA

Downstream 100 bases:

>100_bases
AAATACTTAATCCCTTAAATCATTCCTTAAAAATATTAGTCATGGCAGGATGCATGTATTTGTCTCATGCATCGCATGCC
GAAATCTGGCAACTTCCAGA

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MEPIDILFLFGFLGIWIPQTFWAWLSFQAWKYSKTAEKELQNLPVPERWPFLSVLIPAYNEGVVIEDTLHAIAGQDYPDH
AYEVLLINDGSKDNTLEIAERMAKIYPCIKIVNVPKGMGGKGKSRTLNNGLPHAKGELIVVYDADSTPEPNCVRLLAQTL
LADAKLVAVNGKVRTRNWQDSILTHFIAIEFIFFQWIFQGGRWQRFELSTLMGTNYVIWREALETLGGFDEKSLVDDTEM
SFRIFLGTKRIKWVPYAIGWQQDPPSLQVFVKQRSRWTQGNFYVTHKYLPVALKNPYPIGIEIFNNIMCYILFVPALLWS
HITLTLGLLDIAGVSVPGPFTLLWLLSFCLYVAQMWFTLSLEKAPRPLYFYSVISYISYSQIFLFIVFKAAYEMIKNKIQ
GNSLQWYKTERSKEKKK

Sequences:

>Translated_417_residues
MEPIDILFLFGFLGIWIPQTFWAWLSFQAWKYSKTAEKELQNLPVPERWPFLSVLIPAYNEGVVIEDTLHAIAGQDYPDH
AYEVLLINDGSKDNTLEIAERMAKIYPCIKIVNVPKGMGGKGKSRTLNNGLPHAKGELIVVYDADSTPEPNCVRLLAQTL
LADAKLVAVNGKVRTRNWQDSILTHFIAIEFIFFQWIFQGGRWQRFELSTLMGTNYVIWREALETLGGFDEKSLVDDTEM
SFRIFLGTKRIKWVPYAIGWQQDPPSLQVFVKQRSRWTQGNFYVTHKYLPVALKNPYPIGIEIFNNIMCYILFVPALLWS
HITLTLGLLDIAGVSVPGPFTLLWLLSFCLYVAQMWFTLSLEKAPRPLYFYSVISYISYSQIFLFIVFKAAYEMIKNKIQ
GNSLQWYKTERSKEKKK
>Mature_417_residues
MEPIDILFLFGFLGIWIPQTFWAWLSFQAWKYSKTAEKELQNLPVPERWPFLSVLIPAYNEGVVIEDTLHAIAGQDYPDH
AYEVLLINDGSKDNTLEIAERMAKIYPCIKIVNVPKGMGGKGKSRTLNNGLPHAKGELIVVYDADSTPEPNCVRLLAQTL
LADAKLVAVNGKVRTRNWQDSILTHFIAIEFIFFQWIFQGGRWQRFELSTLMGTNYVIWREALETLGGFDEKSLVDDTEM
SFRIFLGTKRIKWVPYAIGWQQDPPSLQVFVKQRSRWTQGNFYVTHKYLPVALKNPYPIGIEIFNNIMCYILFVPALLWS
HITLTLGLLDIAGVSVPGPFTLLWLLSFCLYVAQMWFTLSLEKAPRPLYFYSVISYISYSQIFLFIVFKAAYEMIKNKIQ
GNSLQWYKTERSKEKKK

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787259, Length=245, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082284, Length=330, Percent_Identity=22.4242424242424, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790044, Length=117, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 48159; Mature: 48159

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPIDILFLFGFLGIWIPQTFWAWLSFQAWKYSKTAEKELQNLPVPERWPFLSVLIPAYN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCC
EGVVIEDTLHAIAGQDYPDHAYEVLLINDGSKDNTLEIAERMAKIYPCIKIVNVPKGMGG
CCEEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHEEEECCCCCCC
KGKSRTLNNGLPHAKGELIVVYDADSTPEPNCVRLLAQTLLADAKLVAVNGKVRTRNWQD
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCEEECCCHHH
SILTHFIAIEFIFFQWIFQGGRWQRFELSTLMGTNYVIWREALETLGGFDEKSLVDDTEM
HHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
SFRIFLGTKRIKWVPYAIGWQQDPPSLQVFVKQRSRWTQGNFYVTHKYLPVALKNPYPIG
EEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCH
IEIFNNIMCYILFVPALLWSHITLTLGLLDIAGVSVPGPFTLLWLLSFCLYVAQMWFTLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEE
LEKAPRPLYFYSVISYISYSQIFLFIVFKAAYEMIKNKIQGNSLQWYKTERSKEKKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCCC
>Mature Secondary Structure
MEPIDILFLFGFLGIWIPQTFWAWLSFQAWKYSKTAEKELQNLPVPERWPFLSVLIPAYN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCC
EGVVIEDTLHAIAGQDYPDHAYEVLLINDGSKDNTLEIAERMAKIYPCIKIVNVPKGMGG
CCEEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHEEEECCCCCCC
KGKSRTLNNGLPHAKGELIVVYDADSTPEPNCVRLLAQTLLADAKLVAVNGKVRTRNWQD
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCEEECCCHHH
SILTHFIAIEFIFFQWIFQGGRWQRFELSTLMGTNYVIWREALETLGGFDEKSLVDDTEM
HHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
SFRIFLGTKRIKWVPYAIGWQQDPPSLQVFVKQRSRWTQGNFYVTHKYLPVALKNPYPIG
EEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCH
IEIFNNIMCYILFVPALLWSHITLTLGLLDIAGVSVPGPFTLLWLLSFCLYVAQMWFTLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEE
LEKAPRPLYFYSVISYISYSQIFLFIVFKAAYEMIKNKIQGNSLQWYKTERSKEKKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]