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The map label for this gene is rhsC [H]

Identifier: 50084277

GI number: 50084277

Start: 1074625

End: 1076283

Strand: Direct

Name: rhsC [H]

Synonym: ACIAD1078

Alternate gene names: 50084277

Gene position: 1074625-1076283 (Clockwise)

Preceding gene: 50084276

Following gene: 50084278

Centisome position: 29.86

GC content: 35.62

Gene sequence:

>1659_bases
TTGTGTGGAACATCGGATGGAACTAGTTCATCAGGATATGGTTATAACAAAGCTGGTCAAATGATTGTTCAGACCAGAGT
TATAAAAGGTACAAATTATCAAACTAACTGGGCATTTGATAACTATGGACGCTTAATTAGCGAAAACTTTGCAAATGATA
GCTACAAAGTTTCTTATGGTTATGACACTTTGAGTAGAATTAATACTGTTAAAGTTCGTATACAAGGCGCTGATAAAGAT
GTAGTAAAAAGTATCACTTATGAACCTTATGGCGGTATTAAAAGTTGGACTTACGGGAATGATTTAACACGTACAACTAG
TTTTGATAAAGATTATAGAATTACTGGAATTAATACAGAGGCCATTCAAAAGCTAAGTCATAGCTATAATATCAATAACT
TGATTAGCAATGTTGATAATAGTCTGGAAGTAAATCGATCGGCTACTTATACTTATGATGCTATAGGACAACTTACTAAA
TCAACTTCTACACAATATATAGAAAGTTGGACTTTTGATAAAAATTCAAATCGAAGTACTCGGGTAGGAAATACAAACCT
AACTACAAATTATCAAACTAATATTGGAAATAGGTTAGCTAGTACGACAATTACAGAAGCAAAAAGCTTTACCTATGATG
TGCTTGGAAATCTAATTAAAAAAACTGGTCACGGCGGGACTGTAGACTACAGCTATGATGGCTTTAATCGCCTAAAAACT
GTGAAGGCTGGAAGCAACAGTACTAATTATGACTATGATGTATTTAATTTACGAACTAGAAAAACTGGTGGAGCTGGTAA
CGTAAATTATATTTACTCTCCCGATGGCAGATTATTAGGTGAGTCAAATACTTCAGATACAAATATCAGTACAGCTTATG
TTTGGTTGTATGGACAGGTAATTGGTGTGGTCCGCAACAATACATTAAATTTTGTACATAATGATCATTTGGGAAGACCT
GAAGTTTTAACTAATCTCTCTAAGACAGTTGTATGGAAATCTCAAAATAACAGTTATGACAGCAATGTGATTCAAAGCAG
TATTGGACAATTTAACATTGGTTTACCAGGTCAATATTATGATGTGGAATCTGGCCTTTGGTATAACTGGAATAGATATT
TTGATGGTACTGTAGGTCGTTATACACAACCTGACCCGATTGGATTAGCTGGTGGAGTAAATACTTATACTTATGTAGGG
AATAATCCTGTGAATTTTATTGACCCATATGGTTTATGGTCATTAAGTATTGAAGGTTATTATGGTGTAGGTGGTGGTGC
TTCAATTAGTTATAATAATGGAACATTAGAAGTTACTGGTAAACTTGGTGTCGGACTTGGTGCAGGGGTTGGTCTTGACC
CTAATGGCAAGCCTTCGAAACATGCACTGGATTGTGGTTCAGGTGCTATCGCAAGAACAAGTTCAAAACTTGAAATGGGA
GCAGGAATTGGACCAATTGAAGCTACACTTTTCGGAGTTTCAGGATATACAGGGAATGGACTTGTACAATCAGAAAAAGG
TGGTGATTTTCAATTTACCAAACCCGAATTAGTAATACCTGGTGTTACTGTCGATCCTTCAAAAAAGTTTTCATGGCGCA
TTGGTGGCAGTGTTGGCGGCAATGTTTCTGCAGAATTCGGTCATTATTCTAATTGGTAA

Upstream 100 bases:

>100_bases
CACGGTTTTAAGTGAAGTGTGTCCAGCGGGTGAAGCGTGGATGGGAGAAGTAAAAAAGGCCAGCATTTTCGTATTGTAGA
TTTAGAGGGTAATCAGGCGG

Downstream 100 bases:

>100_bases
TTATAATGAAAAAATTTATAATTTTTGCTGTCGTAGGTTTATTGATTGCTCTATTAATTGAGCCAATACTTGATAAAGCA
ATGAAGAGTGATGAGGATAC

Product: RHS-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MCGTSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRIQGADKD
VVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTK
STSTQYIESWTFDKNSNRSTRVGNTNLTTNYQTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKT
VKAGSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHNDHLGRP
EVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVG
NNPVNFIDPYGLWSLSIEGYYGVGGGASISYNNGTLEVTGKLGVGLGAGVGLDPNGKPSKHALDCGSGAIARTSSKLEMG
AGIGPIEATLFGVSGYTGNGLVQSEKGGDFQFTKPELVIPGVTVDPSKKFSWRIGGSVGGNVSAEFGHYSNW

Sequences:

>Translated_552_residues
MCGTSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRIQGADKD
VVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTK
STSTQYIESWTFDKNSNRSTRVGNTNLTTNYQTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKT
VKAGSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHNDHLGRP
EVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVG
NNPVNFIDPYGLWSLSIEGYYGVGGGASISYNNGTLEVTGKLGVGLGAGVGLDPNGKPSKHALDCGSGAIARTSSKLEMG
AGIGPIEATLFGVSGYTGNGLVQSEKGGDFQFTKPELVIPGVTVDPSKKFSWRIGGSVGGNVSAEFGHYSNW
>Mature_552_residues
MCGTSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYGYDTLSRINTVKVRIQGADKD
VVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTEAIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTK
STSTQYIESWTFDKNSNRSTRVGNTNLTTNYQTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKT
VKAGSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQVIGVVRNNTLNFVHNDHLGRP
EVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYYDVESGLWYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVG
NNPVNFIDPYGLWSLSIEGYYGVGGGASISYNNGTLEVTGKLGVGLGAGVGLDPNGKPSKHALDCGSGAIARTSSKLEMG
AGIGPIEATLFGVSGYTGNGLVQSEKGGDFQFTKPELVIPGVTVDPSKKFSWRIGGSVGGNVSAEFGHYSNW

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786917, Length=120, Percent_Identity=40.8333333333333, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI48994942, Length=106, Percent_Identity=41.5094339622642, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790020, Length=106, Percent_Identity=42.4528301886792, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786706, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 60116; Mature: 60116

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGTSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYG
CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCHHHHHHHHHHCCCCCEEEEEC
YDTLSRINTVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTE
CHHHCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCHH
AIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRST
HHHHHHHCCCHHHHHHHCCCCEEECCCCEEEHHHHHHHHHCCCHHHHEEECCCCCCCCCE
RVGNTNLTTNYQTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKT
ECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEE
VKAGSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQV
EECCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCEECCCCCCCCCCEEEEEEEEEEE
IGVVRNNTLNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYY
EEEEECCEEEEEECCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCCEEECCCCCCEE
DVESGLWYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGLWSLSIEGY
ECCCCCEECCCEEECCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEEEEECEE
YGVGGGASISYNNGTLEVTGKLGVGLGAGVGLDPNGKPSKHALDCGSGAIARTSSKLEMG
EECCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCEEECCCCHHHC
AGIGPIEATLFGVSGYTGNGLVQSEKGGDFQFTKPELVIPGVTVDPSKKFSWRIGGSVGG
CCCCCCEEEEEEECCCCCCCEEECCCCCCEEECCCCEEECCEEECCCCCEEEEECCCCCC
NVSAEFGHYSNW
CEEECCCCCCCC
>Mature Secondary Structure
MCGTSDGTSSSGYGYNKAGQMIVQTRVIKGTNYQTNWAFDNYGRLISENFANDSYKVSYG
CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCHHHHHHHHHHCCCCCEEEEEC
YDTLSRINTVKVRIQGADKDVVKSITYEPYGGIKSWTYGNDLTRTTSFDKDYRITGINTE
CHHHCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCHH
AIQKLSHSYNINNLISNVDNSLEVNRSATYTYDAIGQLTKSTSTQYIESWTFDKNSNRST
HHHHHHHCCCHHHHHHHCCCCEEECCCCEEEHHHHHHHHHCCCHHHHEEECCCCCCCCCE
RVGNTNLTTNYQTNIGNRLASTTITEAKSFTYDVLGNLIKKTGHGGTVDYSYDGFNRLKT
ECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEE
VKAGSNSTNYDYDVFNLRTRKTGGAGNVNYIYSPDGRLLGESNTSDTNISTAYVWLYGQV
EECCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCEECCCCCCCCCCEEEEEEEEEEE
IGVVRNNTLNFVHNDHLGRPEVLTNLSKTVVWKSQNNSYDSNVIQSSIGQFNIGLPGQYY
EEEEECCEEEEEECCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCCEEECCCCCCEE
DVESGLWYNWNRYFDGTVGRYTQPDPIGLAGGVNTYTYVGNNPVNFIDPYGLWSLSIEGY
ECCCCCEECCCEEECCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEEEEECEE
YGVGGGASISYNNGTLEVTGKLGVGLGAGVGLDPNGKPSKHALDCGSGAIARTSSKLEMG
EECCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCEEECCCCHHHC
AGIGPIEATLFGVSGYTGNGLVQSEKGGDFQFTKPELVIPGVTVDPSKKFSWRIGGSVGG
CCCCCCEEEEEEECCCCCCCEEECCCCCCEEECCCCEEECCEEECCCCCEEEEECCCCCC
NVSAEFGHYSNW
CEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503; 2644231; 2403547; 7934896 [H]