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The map label for this gene is 50084251

Identifier: 50084251

GI number: 50084251

Start: 1043675

End: 1044298

Strand: Reverse

Name: 50084251

Synonym: ACIAD1051

Alternate gene names: NA

Gene position: 1044298-1043675 (Counterclockwise)

Preceding gene: 50084255

Following gene: 50084250

Centisome position: 29.02

GC content: 38.78

Gene sequence:

>624_bases
GTGCTTATGCTGCATTTACCTATTAACCATACTATTACTTTAATCATTATCACGGTCGTCGTGTCATTACTGGCCTTTTC
CAACCAGAATATTATGAATCGTCTAATTTTTTGGCCGCCTGCTATGCAGCGTGGGCAATATGACCGTTTTATTACACATG
GTTTTATTCATGCCGATGGGACTCACCTCCTCTTTAATATGATTACCCTGTTCTTTTTTGGCAGTATTATCGAGAGCTTT
TATCGTCAGTTTTTCTATGATCTCGGGTTTGTTCTATTTTATTTAGGTGGCCTCATTTTTGCCATTTTACCGAGCTATTT
CCAACATAAGAATGACACACACTGGGCAAGCCTAGGTGCATCAGGTGCAGTTTCGGCAGTTTTATTTGCCTATATTTTAT
TTGAACCATGGAAATTAATTTTTGTCTTTTTTATCCCAGTTCCTGCAATCATTTTTGCGGTGCTTTATGTTGCTTATAGC
ATCTGGTCTGGTAAGCGCGGTAACAGTAACGTTAACCACAGCGCCCATTTGTGGGGTGCGGCTTATGGTGTGGTGATGAC
TATTATATTGGAACCTCGTTTGATTCAACATTTCTTAAATAAACTGACTCAATTACCTTTTTAA

Upstream 100 bases:

>100_bases
ATTAAAAAAAATCAACTAAAATTGTCGGATTTGTTTTAAATTCTATTTTTTTATGCCGATTTAATGGCATCATGACAGTC
AAAGAATCCTTTTTATTATT

Downstream 100 bases:

>100_bases
GTCACTAGACAACTAAAGAGCCTGTAAGGCTCTTTCTGTTTGTGCAAAGTTTACAGAGTTACCATAAAATATAAATTGTT
TCACATTATTAAAATTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Transmembrane Rhomboid Family Protein; Integral Membrane Protein; Intramembrane Protease; Cytoplasmic Membrane Protein

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MLMLHLPINHTITLIIITVVVSLLAFSNQNIMNRLIFWPPAMQRGQYDRFITHGFIHADGTHLLFNMITLFFFGSIIESF
YRQFFYDLGFVLFYLGGLIFAILPSYFQHKNDTHWASLGASGAVSAVLFAYILFEPWKLIFVFFIPVPAIIFAVLYVAYS
IWSGKRGNSNVNHSAHLWGAAYGVVMTIILEPRLIQHFLNKLTQLPF

Sequences:

>Translated_207_residues
MLMLHLPINHTITLIIITVVVSLLAFSNQNIMNRLIFWPPAMQRGQYDRFITHGFIHADGTHLLFNMITLFFFGSIIESF
YRQFFYDLGFVLFYLGGLIFAILPSYFQHKNDTHWASLGASGAVSAVLFAYILFEPWKLIFVFFIPVPAIIFAVLYVAYS
IWSGKRGNSNVNHSAHLWGAAYGVVMTIILEPRLIQHFLNKLTQLPF
>Mature_207_residues
MLMLHLPINHTITLIIITVVVSLLAFSNQNIMNRLIFWPPAMQRGQYDRFITHGFIHADGTHLLFNMITLFFFGSIIESF
YRQFFYDLGFVLFYLGGLIFAILPSYFQHKNDTHWASLGASGAVSAVLFAYILFEPWKLIFVFFIPVPAIIFAVLYVAYS
IWSGKRGNSNVNHSAHLWGAAYGVVMTIILEPRLIQHFLNKLTQLPF

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23767; Mature: 23767

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLHLPINHTITLIIITVVVSLLAFSNQNIMNRLIFWPPAMQRGQYDRFITHGFIHADG
CEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHCCEECCH
THLLFNMITLFFFGSIIESFYRQFFYDLGFVLFYLGGLIFAILPSYFQHKNDTHWASLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
SGAVSAVLFAYILFEPWKLIFVFFIPVPAIIFAVLYVAYSIWSGKRGNSNVNHSAHLWGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
AYGVVMTIILEPRLIQHFLNKLTQLPF
HHHHHHHHHHCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLMLHLPINHTITLIIITVVVSLLAFSNQNIMNRLIFWPPAMQRGQYDRFITHGFIHADG
CEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHCCEECCH
THLLFNMITLFFFGSIIESFYRQFFYDLGFVLFYLGGLIFAILPSYFQHKNDTHWASLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
SGAVSAVLFAYILFEPWKLIFVFFIPVPAIIFAVLYVAYSIWSGKRGNSNVNHSAHLWGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
AYGVVMTIILEPRLIQHFLNKLTQLPF
HHHHHHHHHHCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA