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The map label for this gene is ydfH [C]

Identifier: 50084057

GI number: 50084057

Start: 830419

End: 831126

Strand: Direct

Name: ydfH [C]

Synonym: ACIAD0844

Alternate gene names: 50084057

Gene position: 830419-831126 (Clockwise)

Preceding gene: 50084056

Following gene: 50084058

Centisome position: 23.08

GC content: 43.36

Gene sequence:

>708_bases
ATGAATCTTGATGATATAGAGAGTTTGTCCGAGCAAATTGCCCGACATATTGGTGAGCAGATTATTACAGGGGAGCTGGT
TGAGGGAGAGCGCATTCAGGAATTGCGCATTGCCAAAGAACTGGATGTCAGTCGTGGCTCGGTGCGTGAAGCATTGTTAT
TGCTGGAAAGAACGCACCTGATTGAAATATTTCCGCGTCGTGGAGCGATTGTCTCTGAAATGTCCTCTCAGCAGGTAAAA
GCATTATTTGATAGCAGTGTGCTGGTGTTAGGGCATATTGTGCAAAAAATTAGTGAGAGCTGGCGAGTACATGAAGCGGA
GCAGCTTCAGCACCTTATTGAGCAATTGAATGAGCATGTCAAAGCGGGGGATACCGAAAAATTTTACGACGGCATCTTTG
AATATCTCGCTCAGCAACATGATATGGTCATGAATGCGTATCTGATGAAATTTTATAAAGAACTTCTGCCTTCGTTAAGA
CGCAGTTATTTTTTGACCTTAAACACCTCACGACGAGAGCTACAAGAAGCTTTAGCGCTCTTTAAGCTGGTGACTGATGC
TATTTTGATCCGAAAATCACATCAAGCTACTTTATTTATGGAAGATTTTTGCCGACACTTGCGTAACCTTGTGTTGGAGT
CGCTTACGCGCATGAAACAGATTGAATTGGCATGGGCAAGACGTTCACGTCGATCATCAAATCGATAA

Upstream 100 bases:

>100_bases
ACAATGACATAGTCAAGAAAGATTCAAATCAGTTAAAAAATAACGAACACCATGATGGATTGGCAGAAGGATGCCCAATA
AATAATGAAAAAGGTGAGCC

Downstream 100 bases:

>100_bases
AATGTGCGAAGAAATCACATAAGGAAATGGTATAACCTTTCATTTTATATTTCAGTACAGGCTGGAGTATTCATATTCCT
GGATTGATTAGGACATTATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Regulatory Protein GntR HTH; Transcriptional Regulator Gntr Family; Transcription Regulator Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; Bacterial Regulatory Protein

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNLDDIESLSEQIARHIGEQIITGELVEGERIQELRIAKELDVSRGSVREALLLLERTHLIEIFPRRGAIVSEMSSQQVK
ALFDSSVLVLGHIVQKISESWRVHEAEQLQHLIEQLNEHVKAGDTEKFYDGIFEYLAQQHDMVMNAYLMKFYKELLPSLR
RSYFLTLNTSRRELQEALALFKLVTDAILIRKSHQATLFMEDFCRHLRNLVLESLTRMKQIELAWARRSRRSSNR

Sequences:

>Translated_235_residues
MNLDDIESLSEQIARHIGEQIITGELVEGERIQELRIAKELDVSRGSVREALLLLERTHLIEIFPRRGAIVSEMSSQQVK
ALFDSSVLVLGHIVQKISESWRVHEAEQLQHLIEQLNEHVKAGDTEKFYDGIFEYLAQQHDMVMNAYLMKFYKELLPSLR
RSYFLTLNTSRRELQEALALFKLVTDAILIRKSHQATLFMEDFCRHLRNLVLESLTRMKQIELAWARRSRRSSNR
>Mature_235_residues
MNLDDIESLSEQIARHIGEQIITGELVEGERIQELRIAKELDVSRGSVREALLLLERTHLIEIFPRRGAIVSEMSSQQVK
ALFDSSVLVLGHIVQKISESWRVHEAEQLQHLIEQLNEHVKAGDTEKFYDGIFEYLAQQHDMVMNAYLMKFYKELLPSLR
RSYFLTLNTSRRELQEALALFKLVTDAILIRKSHQATLFMEDFCRHLRNLVLESLTRMKQIELAWARRSRRSSNR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27487; Mature: 27487

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDDIESLSEQIARHIGEQIITGELVEGERIQELRIAKELDVSRGSVREALLLLERTHL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IEIFPRRGAIVSEMSSQQVKALFDSSVLVLGHIVQKISESWRVHEAEQLQHLIEQLNEHV
HHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KAGDTEKFYDGIFEYLAQQHDMVMNAYLMKFYKELLPSLRRSYFLTLNTSRRELQEALAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
FKLVTDAILIRKSHQATLFMEDFCRHLRNLVLESLTRMKQIELAWARRSRRSSNR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNLDDIESLSEQIARHIGEQIITGELVEGERIQELRIAKELDVSRGSVREALLLLERTHL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IEIFPRRGAIVSEMSSQQVKALFDSSVLVLGHIVQKISESWRVHEAEQLQHLIEQLNEHV
HHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
KAGDTEKFYDGIFEYLAQQHDMVMNAYLMKFYKELLPSLRRSYFLTLNTSRRELQEALAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
FKLVTDAILIRKSHQATLFMEDFCRHLRNLVLESLTRMKQIELAWARRSRRSSNR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA