| Definition | Acinetobacter sp. ADP1 chromosome, complete genome. |
|---|---|
| Accession | NC_005966 |
| Length | 3,598,621 |
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The map label for this gene is cafA [H]
Identifier: 50084043
GI number: 50084043
Start: 817525
End: 818991
Strand: Direct
Name: cafA [H]
Synonym: ACIAD0830
Alternate gene names: 50084043
Gene position: 817525-818991 (Clockwise)
Preceding gene: 50084042
Following gene: 50084044
Centisome position: 22.72
GC content: 43.49
Gene sequence:
>1467_bases TTGAGTTTTTTTATGTCGGATGAATTACTCATTAATGTCACACCTATGGAGTGTCGGGTGGCATTAATTCAGAATGGAAC AGTGAATGAACTGTTCGTTGAGCGTACGGTCAAACGCGGTCTGGTCGGTAACATTTACATGGGGAAAGTTGTCCGTGTAT TGCCAGGTATGCAAGCTGCTTTTGTTGATATTGGCTTGTCGCGAACGGCTTTTCTCCATATCAATGACATGGTCTGGCCT CGCTCTCAGCCTACGCCAAATGTCTATGAATTATTGCATCCAGGCCAAATTCTGACGGTTCAAGTCATGAAGGATATGCT TGGAACCAAAGGCGCACGTCTTAGTACCGATCTCTCGATTCCTTCGCGTTATTTAGTGATGATGCCTTACGGACACCATA TTGGCGTGTCACAGCGTATTGAAGCCGAGGAGGAAAGAGAGCGCCTGCGCGGCATTATTGAACGTATACAGGTCGAACAC AAGCTTCCTGGCAGCGTGATTGTACGTACCGCAGCAGAAGGTATTGATGAAGCCTCAATTGAGCAGGATATGTGCTATCT GGCAAAATTGTGGGAATTTATCCAGCGTAAAGAAAAGCAGGCGATTGTGCCTAGCTTGATTTTTGAAGAATTGCCACTGC CACAACGCGTCATTCGTGATTTGGCTAGTGAAGACATGACCAAAATTTATGTCGATTCGCGTGAAATACATGCCAAATTA AAAGAATTTATTGATGAGTTTGTACCGAATATTCAAAATCGTCTCATTCATTATCCGGGTGAGCGCCCACTTTTTGATTT ATATAATGTCGAAGAGGATATTCAAAAAGCATTACAAACACGTGTTGCCTTGAAATCTGGTGGTTATTTGATGATCGACC AGACCGAAGCCATGACCACGATTGATGTGAATACGGGTTCTTATGTGGGTGGACGAACCCTCGAAGATACTGTATTTAAA ACCAATATGGAGGCAACACAGGTCATTGCACGCCAATTACGGTTACGTAATTTGGGTGGGATCATCATCATTGACTTCAT CGATATGCAAGAAGCAACGCATCGCGAAGAAGTGATGAAACAGTTTCAGAAAATGCTGGAACGTGATCATGCCAAAACCA AGATTACCCAAGTATCTGAACTGGGCCTGGTTGAAATGACACGTAAACGAACGCGTGAATCATTGGAACATTTGCTGTGT GAGTCGTGTCCAACCTGTCAGGGCCGTGGCTATGTTAAAACAGCAGAGACGGTTTGTTACGAGATATTTCGTGAAATTTT ACGTTATACGCGAGCTTTTGAATCACAGAGTGGCTTTACTGTTGTTGCGCATCCATCTGTAATTGATCGCCTGTTGACGG CAGAAGCACCAGCAGTCGCGGATCTTGAGCATTTCATTAATCGGGTCATAAAATTTCAAGTCGAAAATTTATACACGCAA GAGCAATATGACATCATTTTGAGTTAA
Upstream 100 bases:
>100_bases TTATACCAATGTCGTTGGTTTGCCTTTGTTTGAAACAATACAGTTACTAAAAAGAGTTAAGGCTTTCAATTAACTCTGAA ACAAGAATTTTTATAACAAT
Downstream 100 bases:
>100_bases AGTTGTAACAAAATTTCGCTTAATCCTTGTTACAACTGAAATTTTACTTTTATTGGCGAATTTTCAATACTAGGTACACA ACATAGCCAAAGACTTTTCT
Product: ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein )
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MSFFMSDELLINVTPMECRVALIQNGTVNELFVERTVKRGLVGNIYMGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVWP RSQPTPNVYELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVMMPYGHHIGVSQRIEAEEERERLRGIIERIQVEH KLPGSVIVRTAAEGIDEASIEQDMCYLAKLWEFIQRKEKQAIVPSLIFEELPLPQRVIRDLASEDMTKIYVDSREIHAKL KEFIDEFVPNIQNRLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRTLEDTVFK TNMEATQVIARQLRLRNLGGIIIIDFIDMQEATHREEVMKQFQKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLC ESCPTCQGRGYVKTAETVCYEIFREILRYTRAFESQSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQ EQYDIILS
Sequences:
>Translated_488_residues MSFFMSDELLINVTPMECRVALIQNGTVNELFVERTVKRGLVGNIYMGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVWP RSQPTPNVYELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVMMPYGHHIGVSQRIEAEEERERLRGIIERIQVEH KLPGSVIVRTAAEGIDEASIEQDMCYLAKLWEFIQRKEKQAIVPSLIFEELPLPQRVIRDLASEDMTKIYVDSREIHAKL KEFIDEFVPNIQNRLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRTLEDTVFK TNMEATQVIARQLRLRNLGGIIIIDFIDMQEATHREEVMKQFQKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLC ESCPTCQGRGYVKTAETVCYEIFREILRYTRAFESQSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQ EQYDIILS >Mature_487_residues SFFMSDELLINVTPMECRVALIQNGTVNELFVERTVKRGLVGNIYMGKVVRVLPGMQAAFVDIGLSRTAFLHINDMVWPR SQPTPNVYELLHPGQILTVQVMKDMLGTKGARLSTDLSIPSRYLVMMPYGHHIGVSQRIEAEEERERLRGIIERIQVEHK LPGSVIVRTAAEGIDEASIEQDMCYLAKLWEFIQRKEKQAIVPSLIFEELPLPQRVIRDLASEDMTKIYVDSREIHAKLK EFIDEFVPNIQNRLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTTIDVNTGSYVGGRTLEDTVFKT NMEATQVIARQLRLRNLGGIIIIDFIDMQEATHREEVMKQFQKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLCE SCPTCQGRGYVKTAETVCYEIFREILRYTRAFESQSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQE QYDIILS
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=493, Percent_Identity=52.9411764705882, Blast_Score=508, Evalue=1e-145, Organism=Escherichia coli, GI1787325, Length=425, Percent_Identity=35.7647058823529, Blast_Score=260, Evalue=1e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 55971; Mature: 55839
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFFMSDELLINVTPMECRVALIQNGTVNELFVERTVKRGLVGNIYMGKVVRVLPGMQAA CCCEECCCEEEEECCHHEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH FVDIGLSRTAFLHINDMVWPRSQPTPNVYELLHPGQILTVQVMKDMLGTKGARLSTDLSI HHHCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHHCCCCCCEEECCCC PSRYLVMMPYGHHIGVSQRIEAEEERERLRGIIERIQVEHKLPGSVIVRTAAEGIDEASI CCCEEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH EQDMCYLAKLWEFIQRKEKQAIVPSLIFEELPLPQRVIRDLASEDMTKIYVDSREIHAKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECHHHHHHHH KEFIDEFVPNIQNRLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTT HHHHHHHHCHHHHHHEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEE IDVNTGSYVGGRTLEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEATHREEVMK EECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHH QFQKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH EIFREILRYTRAFESQSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQ HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC EQYDIILS CHHCEECC >Mature Secondary Structure SFFMSDELLINVTPMECRVALIQNGTVNELFVERTVKRGLVGNIYMGKVVRVLPGMQAA CCEECCCEEEEECCHHEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH FVDIGLSRTAFLHINDMVWPRSQPTPNVYELLHPGQILTVQVMKDMLGTKGARLSTDLSI HHHCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHHCCCCCCEEECCCC PSRYLVMMPYGHHIGVSQRIEAEEERERLRGIIERIQVEHKLPGSVIVRTAAEGIDEASI CCCEEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH EQDMCYLAKLWEFIQRKEKQAIVPSLIFEELPLPQRVIRDLASEDMTKIYVDSREIHAKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECHHHHHHHH KEFIDEFVPNIQNRLIHYPGERPLFDLYNVEEDIQKALQTRVALKSGGYLMIDQTEAMTT HHHHHHHHCHHHHHHEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEE IDVNTGSYVGGRTLEDTVFKTNMEATQVIARQLRLRNLGGIIIIDFIDMQEATHREEVMK EECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHH QFQKMLERDHAKTKITQVSELGLVEMTRKRTRESLEHLLCESCPTCQGRGYVKTAETVCY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH EIFREILRYTRAFESQSGFTVVAHPSVIDRLLTAEAPAVADLEHFINRVIKFQVENLYTQ HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC EQYDIILS CHHCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]