Click here to switch to the map view.

The map label for this gene is yfiB [H]

Identifier: 50083884

GI number: 50083884

Start: 643290

End: 643769

Strand: Reverse

Name: yfiB [H]

Synonym: ACIAD0653

Alternate gene names: 50083884

Gene position: 643769-643290 (Counterclockwise)

Preceding gene: 50083885

Following gene: 50083879

Centisome position: 17.89

GC content: 37.29

Gene sequence:

>480_bases
ATGTATAACAACTCAATCAAAATATCTATTCTTGGGGTCATTTGCCTTATTCTGGCAGGATGTCTAAGCTTTGGACCACT
CAAATATAAGCAGGTCAAAATGCTCCAAAAAGAAGGTTTTGTACAGACAGATGAAGGATGGACACTCGGTTTACCAGAAC
GCTTACTTTTTGAATTTGATAAATCTGAAGTAAATCCTGCGCACCAACAAGAGATTATTCGTTTGGCTAATCAACTGAAT
AAATATGGATTACATAAGTTAAAGGTGGTGGGTTATACCGATAATATTGGTAATCGTGATTATAATTTAAAGCTATCTCA
AGCCAGAGCGCAAAGCGTGGCAGCAATTTTCATAAATAATAGTTTTACACCTAATCATATTCAGATTATTGGACGTGGAT
CAAATCAACCTCTACTGCCTAACACCACAGAAGAGAATCGTGCAGCGAATCGCCGCGTTGCAATTGTAATCGTTCCATAA

Upstream 100 bases:

>100_bases
CTGAAGAACTAATTGCTCAAGCAGATCAAGCCATGTATAAGGCAAAACATCTCACCCATCACTGGTTTATCCATAAACCG
TAAATTTCAGGTAGTTCACT

Downstream 100 bases:

>100_bases
TCTTATTGATGGTTACAGGAAATAGAAAGATTCTGTTGTGAATCTTTCTATTTTTTATAAAAAATAAAATTTAGGCATAA
AAAAACCGCATTTAAGCGGA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MYNNSIKISILGVICLILAGCLSFGPLKYKQVKMLQKEGFVQTDEGWTLGLPERLLFEFDKSEVNPAHQQEIIRLANQLN
KYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVIVP

Sequences:

>Translated_159_residues
MYNNSIKISILGVICLILAGCLSFGPLKYKQVKMLQKEGFVQTDEGWTLGLPERLLFEFDKSEVNPAHQQEIIRLANQLN
KYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVIVP
>Mature_159_residues
MYNNSIKISILGVICLILAGCLSFGPLKYKQVKMLQKEGFVQTDEGWTLGLPERLLFEFDKSEVNPAHQQEIIRLANQLN
KYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAIFINNSFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVIVP

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=153, Percent_Identity=35.9477124183007, Blast_Score=90, Evalue=6e-20,
Organism=Escherichia coli, GI48994946, Length=111, Percent_Identity=35.1351351351351, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17848; Mature: 17848

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNNSIKISILGVICLILAGCLSFGPLKYKQVKMLQKEGFVQTDEGWTLGLPERLLFEFD
CCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCEEECCCHHHHEEEC
KSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAIFINN
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEHHHHHCEEEEEEEEC
SFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVIVP
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MYNNSIKISILGVICLILAGCLSFGPLKYKQVKMLQKEGFVQTDEGWTLGLPERLLFEFD
CCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCEEECCCHHHHEEEC
KSEVNPAHQQEIIRLANQLNKYGLHKLKVVGYTDNIGNRDYNLKLSQARAQSVAAIFINN
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEHHHHHCEEEEEEEEC
SFTPNHIQIIGRGSNQPLLPNTTEENRAANRRVAIVIVP
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6357787; 9205837; 9278503; 6298574 [H]