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The map label for this gene is ywbI [H]

Identifier: 50083705

GI number: 50083705

Start: 454936

End: 455865

Strand: Reverse

Name: ywbI [H]

Synonym: ACIAD0457

Alternate gene names: 50083705

Gene position: 455865-454936 (Counterclockwise)

Preceding gene: 50083707

Following gene: 50083703

Centisome position: 12.67

GC content: 42.58

Gene sequence:

>930_bases
ATGAGTATCCCCTTTTCTCGCTTTTCCGATTATTTTATGACAGTCGCCAAAACTGGAAACCTCCGAAAGGCTGCTGACCA
ATTACATATTTCAGTCTCGGCGGTGCACCGACAAATCGCTTTAGCTGAAGAGGAGCTAGATATTGCATTGTTTGAACGGC
TGCCAAATGGCTTAAAGCTCACCTTGGCAGGAGAAATGCTGTATTCAGATGTGCTGCGTTGGCAAAAAGAATATAAACAA
ACCTGTATGCGTTTTGATGAAATACAAGGATTGAAACGTGGCGCTATTGAACTTGGATTAATTGCCGCATTAAGCGACGG
GTTTGTGGTGGATGTACTGGCGACATTACAGAGTGAGTTTCCATGGATTACGCTCAACATTCTGACCGATGATAGTGATG
TCCTGATTAACAAAATCATCACTAATGAGATTGATGTTGGCCTCATTCTTGATCCAGTTGTCAGCGCCCAACTAGATGTC
ATGTCTTTTGTCGAAATTCCGATAGGTTTTGTGATGTGTCCCGATCACCCTTTGGCACAGCACACTCATCTCACGTTATC
TCAAACCCTAGATACCCGACATATTGTCCCCGATCAACCGTTGGTTATTCACGATAGAGTAATGGCAATGTATAAAAAAT
ATCACGCCAACCCAGCCCAGATTACGCTTTCCAATGACATTCGCCTTATACAGTCCATGCTCAAGAAAAATATGGGCATC
GCGTTATTGAGTTATCTGGATGTTTATAGTGCAGTAGAAAAACAAGAGTTAATTTTTATTCCATTAGAAGACAAGACCAT
ACAGCCATTAACGCTGGCGCTCTGTAGTGGTTCGCGGCGCCAGTTATCACGTATTGCACAGCTTTTAATTCGGACCTTGA
CTGAGCAAATGGAAATAAAATTCAATCACGCATTGGCTGGCTTTAAGTAA

Upstream 100 bases:

>100_bases
TCACTGTTTAGTCGTGCAGTAAGTGCTACTCTGATAGAAATCCATTGTTCTGTCTATTATAATGATTTGAAGTAATCATT
CTGATTTTTAGAACACCATA

Downstream 100 bases:

>100_bases
TATCAAATCGACCAATCTTCTATTGTCCAGCCCTGATCAATAGCCAATTTTTCCAGACGATCATCTGGATTGACTGCGAT
GGCATGGGTTGCGTATTCCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSIPFSRFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDVLRWQKEYKQ
TCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDDSDVLINKIITNEIDVGLILDPVVSAQLDV
MSFVEIPIGFVMCPDHPLAQHTHLTLSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGI
ALLSYLDVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQLLIRTLTEQMEIKFNHALAGFK

Sequences:

>Translated_309_residues
MSIPFSRFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDVLRWQKEYKQ
TCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDDSDVLINKIITNEIDVGLILDPVVSAQLDV
MSFVEIPIGFVMCPDHPLAQHTHLTLSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGI
ALLSYLDVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQLLIRTLTEQMEIKFNHALAGFK
>Mature_308_residues
SIPFSRFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKLTLAGEMLYSDVLRWQKEYKQT
CMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEFPWITLNILTDDSDVLINKIITNEIDVGLILDPVVSAQLDVM
SFVEIPIGFVMCPDHPLAQHTHLTLSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGIA
LLSYLDVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQLLIRTLTEQMEIKFNHALAGFK

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=233, Percent_Identity=24.8927038626609, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=24.2307692307692, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI145693105, Length=169, Percent_Identity=26.6272189349112, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789204, Length=283, Percent_Identity=23.6749116607774, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=264, Percent_Identity=21.2121212121212, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=183, Percent_Identity=27.3224043715847, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=148, Percent_Identity=26.3513513513513, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790399, Length=260, Percent_Identity=21.5384615384615, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34857; Mature: 34726

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPFSRFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKL
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
TLAGEMLYSDVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCC
PWITLNILTDDSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQ
CEEEEEEEECCHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCEEECCCCCCCC
HTHLTLSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGI
CCEEEHHHCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCH
ALLSYLDVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQLLIRTLTEQMEIK
HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHH
FNHALAGFK
HHHHCCCCC
>Mature Secondary Structure 
SIPFSRFSDYFMTVAKTGNLRKAADQLHISVSAVHRQIALAEEELDIALFERLPNGLKL
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
TLAGEMLYSDVLRWQKEYKQTCMRFDEIQGLKRGAIELGLIAALSDGFVVDVLATLQSEF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCC
PWITLNILTDDSDVLINKIITNEIDVGLILDPVVSAQLDVMSFVEIPIGFVMCPDHPLAQ
CEEEEEEEECCHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCEEECCCCCCCC
HTHLTLSQTLDTRHIVPDQPLVIHDRVMAMYKKYHANPAQITLSNDIRLIQSMLKKNMGI
CCEEEHHHCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCH
ALLSYLDVYSAVEKQELIFIPLEDKTIQPLTLALCSGSRRQLSRIAQLLIRTLTEQMEIK
HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHH
FNHALAGFK
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]