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The map label for this gene is yqgF [C]

Identifier: 50083614

GI number: 50083614

Start: 345524

End: 345967

Strand: Reverse

Name: yqgF [C]

Synonym: ACIAD0352

Alternate gene names: 50083614

Gene position: 345967-345524 (Counterclockwise)

Preceding gene: 50083615

Following gene: 50083610

Centisome position: 9.61

GC content: 47.75

Gene sequence:

>444_bases
ATGCCTGATTCAATGTCTCACCAAATGATTATGGCCTTTGATTTTGGTACTCAGAAAATGGGAATCGCCATAGGTCAAGC
CGCGATTGAAAGCAGTACGCCACTGGCGCTTTTTCCGATGAAGGATGGCATTCCAGACTGGAACCAACTGCTAAAAATCG
TAAAGGAATGGCAACCCACACTTTTTCTGGTTGGTCTTCCACTCAATATGGACGATTCTGAATCGGAGCTGTCTGCACGA
GCACGTAAATTTGCGCGTCGCTTACGCCACCAGACCAATATTACAACGTGGATGGTCGACGAACGGCTTACCACCCGTGA
AGCACGTGATGAGCTTGAAAGTTATCAAGAGCAAGGACGTGCAAAAAAGATTGCGGCAGACAGCATCGCAGCATCACTTT
TAATTCAAAGCTGGTATCGCGCCCCACAAGGTGTCCAACCCTAA

Upstream 100 bases:

>100_bases
GATATGGATCTTATTTTTAATCTTCCTTATGACGAACGCTGGGATGCTGCTTATAAAAAGCTTGGCGTTGATCGTATCTG
GTTATCTTCAGAGATCGGCC

Downstream 100 bases:

>100_bases
ATAAAAAGATGGCCCAACCACAGGGTCAAGCCATCTTTTTCGATCAAAAATTCGTATCACACTCAGTTTTTTTGCGAATT
ACTTTGTACAATATTCACCG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGLPLNMDDSESELSAR
ARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGRAKKIAADSIAASLLIQSWYRAPQGVQP

Sequences:

>Translated_147_residues
MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGLPLNMDDSESELSAR
ARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGRAKKIAADSIAASLLIQSWYRAPQGVQP
>Mature_146_residues
PDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGLPLNMDDSESELSARA
RKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGRAKKIAADSIAASLLIQSWYRAPQGVQP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=43.9393939393939, Blast_Score=117, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ACIAD (Q6FF55)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_045124.1
- ProteinModelPortal:   Q6FF55
- SMR:   Q6FF55
- STRING:   Q6FF55
- GeneID:   2881004
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD0352
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ACVILEQ
- PhylomeDB:   Q6FF55
- ProtClustDB:   PRK00109
- BioCyc:   ASP62977:ACIAD0352-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16679; Mature: 16548

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT
CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE
LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCH
AKKIAADSIAASLLIQSWYRAPQGVQP
HHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT
CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE
LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCH
AKKIAADSIAASLLIQSWYRAPQGVQP
HHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA