Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 50083532

GI number: 50083532

Start: 252803

End: 253903

Strand: Direct

Name: lptF [H]

Synonym: ACIAD0254

Alternate gene names: 50083532

Gene position: 252803-253903 (Clockwise)

Preceding gene: 50083527

Following gene: 50083533

Centisome position: 7.02

GC content: 43.96

Gene sequence:

>1101_bases
TTGATTATTCGACGTTATCTTGTCAAACAAGTGGTATCGACGTCCTTGGTAGTGATTGCCTTATTGACCTTAATCATGAT
GGGTGGTCGTTTAATCAAGTATTTTGGCGTGGCTGCTCAGGGTCGTTTGGATGCTGGCGTACTGTTTAGCATCATTGGCT
ATCGTATGCCTGAATTTTTAACCCTGATCTTACCGTTAGGATTCTTTATTGGTTTGATGCTGGTGTTTGGTCGACTTTAC
GTTGATCATGAAATGGCTGTACTCAATGGCAGTGGCATCAGTCGAATTCGACTTGGACAGCTATTGATTCCACTGGCTTT
GGTCTTCTTGGTGATACAAGGCATTTTGATGCTATGGATGACGCCTTGGGGGCTACGCCAGTTTGATCAACTCTCCAGTA
GTCAGGCTGTTCGTACAGGCTTTGATTTAGTCAGACCCAAAGAATTTATATCATCGGGGCCTTATACCATCTATGCAGGG
GATTTATCCGAAGACCGTAAAAACCTGAAAGATATTTTCTTCTACCAGCGAGCACAAAAAGAAGGCAAACCCGATGTCAT
GATTCTGGCCAAAGAAGCCACGCGTGTGGTCATGGAAAATGAAACGGCCAATGTAGTGGACTTGATTCAGGGACGTCGCT
ACGAAATTTATCCAGGAAAGGCAAAATATTCACAGGCCGAATTCCAGCGCTATCGTTTACGTCTAGAAAATGATAAGTCG
GCAACCTTTGAAACTGACAAAGTTGAGGCATTGCCAAGTTCAAAACTCTGGAACAAATGGAACGATCCAGTCATTGCCAG
TGAAATGGGCTGGCGTGTATTTGGCCCTTTTACCATTGTCATTGCCTTGATGATGGCTGTTGCACTGTGTGAGGTAAGTC
CGCGTCAGGGACGTTATTATCGACTTATTCCTGCGATTTTTATCTTTGCGAGTTTAATTGTATTGTTAATCGCAATTCGT
ACACGTATTAGTCGTGATGAACTAGGTGTATGGGCTTATCCAGCAGCCTTGGCTGTGTATGGTATTGCTGCGGCGTTATT
CTCACGCAAGCAAAAGCTGGCGCCTAAAATTAAGAAACAGATCAAACGAGTGAGAGCATAA

Upstream 100 bases:

>100_bases
CTTTGCGCGAGTTTCAATGTGCAACACATCGATAGGTTTTATATTTTTAGCATTCGGGTAAACTAGCGTGAGTTTCGATT
GCCTTTTTGGAAGCACTAAT

Downstream 100 bases:

>100_bases
TGTTAGCACGTCGAATCGTCGCAAAGCATGTGACCAAAACCACGGCGCTAGCAATGCTAGGAACCACGATTGTTTTGGTG
ATTTTGCAGGTTTTATTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MIIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFLTLILPLGFFIGLMLVFGRLY
VDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWMTPWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAG
DLSEDRKNLKDIFFYQRAQKEGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLENDKS
ATFETDKVEALPSSKLWNKWNDPVIASEMGWRVFGPFTIVIALMMAVALCEVSPRQGRYYRLIPAIFIFASLIVLLIAIR
TRISRDELGVWAYPAALAVYGIAAALFSRKQKLAPKIKKQIKRVRA

Sequences:

>Translated_366_residues
MIIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFLTLILPLGFFIGLMLVFGRLY
VDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWMTPWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAG
DLSEDRKNLKDIFFYQRAQKEGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLENDKS
ATFETDKVEALPSSKLWNKWNDPVIASEMGWRVFGPFTIVIALMMAVALCEVSPRQGRYYRLIPAIFIFASLIVLLIAIR
TRISRDELGVWAYPAALAVYGIAAALFSRKQKLAPKIKKQIKRVRA
>Mature_366_residues
MIIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFLTLILPLGFFIGLMLVFGRLY
VDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWMTPWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAG
DLSEDRKNLKDIFFYQRAQKEGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLENDKS
ATFETDKVEALPSSKLWNKWNDPVIASEMGWRVFGPFTIVIALMMAVALCEVSPRQGRYYRLIPAIFIFASLIVLLIAIR
TRISRDELGVWAYPAALAVYGIAAALFSRKQKLAPKIKKQIKRVRA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=351, Percent_Identity=25.9259259259259, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41515; Mature: 41515

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWM
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TPWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAQK
CCCCHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
EGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLENDKS
CCCCCEEEEEHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCC
ATFETDKVEALPSSKLWNKWNDPVIASEMGWRVFGPFTIVIALMMAVALCEVSPRQGRYY
CCCCCHHHHCCCCHHHHCCCCCCEEEHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCEE
RLIPAIFIFASLIVLLIAIRTRISRDELGVWAYPAALAVYGIAAALFSRKQKLAPKIKKQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKRVRA
HHHHCC
>Mature Secondary Structure
MIIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWM
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TPWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAQK
CCCCHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
EGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLENDKS
CCCCCEEEEEHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCC
ATFETDKVEALPSSKLWNKWNDPVIASEMGWRVFGPFTIVIALMMAVALCEVSPRQGRYY
CCCCCHHHHCCCCHHHHCCCCCCEEEHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCEE
RLIPAIFIFASLIVLLIAIRTRISRDELGVWAYPAALAVYGIAAALFSRKQKLAPKIKKQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKRVRA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]