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The map label for this gene is ycfQ [H]

Identifier: 50083478

GI number: 50083478

Start: 191273

End: 191977

Strand: Direct

Name: ycfQ [H]

Synonym: ACIAD0196

Alternate gene names: 50083478

Gene position: 191273-191977 (Clockwise)

Preceding gene: 50083473

Following gene: 50083479

Centisome position: 5.32

GC content: 43.55

Gene sequence:

>705_bases
GTGATTGTTATAAAAATATATGTGGTCTTTATGACAGATGTAGCAAATTGTGCTGAACAAAACAGTCCAGAGCAGGCAGT
GAAGAAGAAACGTGGCCGTCCAAAATGTTTTGATGAACAAGCTGCACTTGAACAGGCAATGTTATTGTTTTGGGAACATG
GTTATGAGGCAACGTCTATTAATGACCTGACCCAGCTACTCGGTATCACAGCGCCCAGCTTATACAGTACGTTTGGTGAT
AAAGCGACGTTATTTTATAAAAGCATTGATTATTATCTGGCGCATGAAGCTTGCCCTATAGATCGGATGTTTGAGCAGGC
GAAAACCGCCAGAATCGCGTTCGAACTTTATATGTATGACAATCTGAATCGCCTGCTTCAGCCCAATAAACCCTCAGGAT
GTATGCTGGTCGTTGCTACCATGAACTGTTCAGAATCAACGCAGGATGTGCAGCAGAATTTATTGGCCAAACGCCTCAAG
ACCAAAGAAAAATTGATGCAGCGTCTACAAAAGGGAATATCGGAAGGTGACCTGCCAGAACATATACCACTTGAAGCCAT
GACCGATTTTTATTGTACGGTGATACAGGGGTTGACCATGCAAGCACGTGATGGTGCCTCACTTGCGCAATTGACCAAGG
TGGTTGAGCATGCAATGCGTGCTTGGTCTTTATTTGTAGATACACATGGCGAGACTACGATATAA

Upstream 100 bases:

>100_bases
AAGAGAGATGACGAATAGATGAGAGCGTGTTTTAATTTAATAATGATCACTATGAAAATAAAAATAGTTGAACATTTAAA
CTGCGTCAAGTAATTTAATA

Downstream 100 bases:

>100_bases
ATGTCCGAAATACGATATTTTAATTTCAACCGTCATTGAGCACAATTTAATGATCTAGGCTGTAGCGGAAGTAATATATG
AATCAGACGACAAAAGTACA

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIVIKIYVVFMTDVANCAEQNSPEQAVKKKRGRPKCFDEQAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGD
KATLFYKSIDYYLAHEACPIDRMFEQAKTARIAFELYMYDNLNRLLQPNKPSGCMLVVATMNCSESTQDVQQNLLAKRLK
TKEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGLTMQARDGASLAQLTKVVEHAMRAWSLFVDTHGETTI

Sequences:

>Translated_234_residues
MIVIKIYVVFMTDVANCAEQNSPEQAVKKKRGRPKCFDEQAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGD
KATLFYKSIDYYLAHEACPIDRMFEQAKTARIAFELYMYDNLNRLLQPNKPSGCMLVVATMNCSESTQDVQQNLLAKRLK
TKEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGLTMQARDGASLAQLTKVVEHAMRAWSLFVDTHGETTI
>Mature_234_residues
MIVIKIYVVFMTDVANCAEQNSPEQAVKKKRGRPKCFDEQAALEQAMLLFWEHGYEATSINDLTQLLGITAPSLYSTFGD
KATLFYKSIDYYLAHEACPIDRMFEQAKTARIAFELYMYDNLNRLLQPNKPSGCMLVVATMNCSESTQDVQQNLLAKRLK
TKEKLMQRLQKGISEGDLPEHIPLEAMTDFYCTVIQGLTMQARDGASLAQLTKVVEHAMRAWSLFVDTHGETTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=207, Percent_Identity=35.2657004830918, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI87082397, Length=180, Percent_Identity=28.3333333333333, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26506; Mature: 26506

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVIKIYVVFMTDVANCAEQNSPEQAVKKKRGRPKCFDEQAALEQAMLLFWEHGYEATSI
CEEEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
NDLTQLLGITAPSLYSTFGDKATLFYKSIDYYLAHEACPIDRMFEQAKTARIAFELYMYD
HHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
NLNRLLQPNKPSGCMLVVATMNCSESTQDVQQNLLAKRLKTKEKLMQRLQKGISEGDLPE
CHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HIPLEAMTDFYCTVIQGLTMQARDGASLAQLTKVVEHAMRAWSLFVDTHGETTI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCC
>Mature Secondary Structure
MIVIKIYVVFMTDVANCAEQNSPEQAVKKKRGRPKCFDEQAALEQAMLLFWEHGYEATSI
CEEEEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
NDLTQLLGITAPSLYSTFGDKATLFYKSIDYYLAHEACPIDRMFEQAKTARIAFELYMYD
HHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
NLNRLLQPNKPSGCMLVVATMNCSESTQDVQQNLLAKRLKTKEKLMQRLQKGISEGDLPE
CHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
HIPLEAMTDFYCTVIQGLTMQARDGASLAQLTKVVEHAMRAWSLFVDTHGETTI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]