Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 49481628

GI number: 49481628

Start: 3679046

End: 3679561

Strand: Reverse

Name: rimM

Synonym: BT9727_3583

Alternate gene names: 49481628

Gene position: 3679561-3679046 (Counterclockwise)

Preceding gene: 49481622

Following gene: 49478409

Centisome position: 70.25

GC content: 33.91

Gene sequence:

>516_bases
ATGACAAAATGGTTTAACGTAGGAAAAATTGTAAATACTCATGGCGTAAAAGGAGAAATTCGTGTGGTTTCTCGTACTGA
CTTTCCAGAAGAGCGATATAAAGTAGGGAATACGTTATACATATCGAATGAAAAAGGTGGAGAGCCTTTCCCAGTAAAGA
TTACTTCTCATCGTCAACATAAAACATTTGATTTATTGACATTTGAAGGATACGGGAATGTAAATGAAGTAGAACAGTTT
AAAGGTTCTCTTTTAAAAGTGCCTGAAGATCAATTAGGTGAACTAGCTGAAGGTGAATATTACTATCATGAAATTATTGG
TTGCAATGTTGTAACGGAAGAAGGAGAAGCGTTAGGGACAATAAAAGAAGTTTTATCTCCTGGTGCAAATGATGTTTGGG
TAATTAAACGTCCAAAAGGTCAAGATTTGTTAATTCCTTATATTGATGATGTTGTGCTTCAAGTTAACATTGAGAATAAA
TTAGTAACCATTCATGTAATGGAAGGGCTACTATAA

Upstream 100 bases:

>100_bases
TATTCCTCTCCCTTTTTTAACATTTAAAGAGAAGTTGCATGTTCCATATGAGAAATGGGGATGCTTAATTTATATAGAAA
CCAGGGGTGACATACTGTTT

Downstream 100 bases:

>100_bases
TGAAAATTGACATTTTAACATTGTTTCCAGATATGTTTACAGGTGTGTTTGGATCTTCAATTTTAAAGAAAGCACAAGAA
AAAGAAGCGGTAGAGCTTCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQF
KGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENK
LVTIHVMEGLL

Sequences:

>Translated_171_residues
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQF
KGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENK
LVTIHVMEGLL
>Mature_170_residues
TKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQFK
GSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKL
VTIHVMEGLL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=164, Percent_Identity=27.4390243902439, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19302; Mature: 19171

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH
CCCEECCCEEEECCCCCEEEEEEEECCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHCCCCCCCEEEEEEEECEEEECCCCHHHH
IKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCC
>Mature Secondary Structure 
TKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH
CCEECCCEEEECCCCCEEEEEEEECCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHCCCCCCCEEEEEEEECEEEECCCCHHHH
IKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA