Click here to switch to the map view.

The map label for this gene is comFC

Identifier: 49480782

GI number: 49480782

Start: 4917113

End: 4917817

Strand: Reverse

Name: comFC

Synonym: BT9727_4871

Alternate gene names: 49480782

Gene position: 4917817-4917113 (Counterclockwise)

Preceding gene: 49481146

Following gene: 49481145

Centisome position: 93.89

GC content: 36.17

Gene sequence:

>705_bases
ATGCATTGTTTACTTTGTGATGAATATATGTTGGAAACAGTTAGTTGGTACACTTTCTTTGTAAAGTCTCATAAAAAATA
TGTATGTGATAGATGTGAGCGGAAACTTTCCTATATTATAGGAGAGATTTGCATGGAGTGCGGGCGACCTTTAGAACTTC
TCTCTACTGTATTTAAAAAGGATGATATTTGTATGGATTGTATACGGTGGATGAAGGAAGAGAAGTATCGACCTTTAAAA
AATCGTTCTTTGTATGTATACGATGATGAGATGAAAGAAGTGTTGGCACAGTTTAAGTTTCGAGGTGATGCGGAATTAGT
TCGTATTTTTTATCGATCTTTTCGGGAGCTATTTCAAAAGTATTTTACGAGCGTTTCAACTGTTATTCCTGTTCCGCTTA
GTAGGGAACGGGAATATGAACGTGGTTTTAATCAAGCAGAGTTATTAGCAGCTTGTTTGCCTGTCGAAAATTCTGATTCA
TCCTTAAGAAGGAAGGAAACAGAAAAGCAAAGTAAGAAGACACGTAAAGAAAGGCTTTCGGGAAGTAATCCTTTTTATTT
TCAAAGAGAAGAGATGTTTCATGGTCAACGCATTTTACTTGTTGACGATGTATATACGACAGGAATTACAGTGAGACAAA
TTGGAAGTCTTTTGTATGATAGAGGAGCAAGGGAAGTTTCTAGTTTGACGCTCTGTAGAAGTTGA

Upstream 100 bases:

>100_bases
TTGTTTATTTTCATTACGGTAAGACAGAGTCGATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAA
GAACAAGGATTAATTGATTA

Downstream 100 bases:

>100_bases
TCTGTAACTGTCGAAAGTGATAATAAAAAGGCGATAAGTCTTCTTTGACTTCGTATGTTGTCATTCGTTATAGTCAAATT
ATGGGGCGAATGCCCTGATT

Product: comF operon protein 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MHCLLCDEYMLETVSWYTFFVKSHKKYVCDRCERKLSYIIGEICMECGRPLELLSTVFKKDDICMDCIRWMKEEKYRPLK
NRSLYVYDDEMKEVLAQFKFRGDAELVRIFYRSFRELFQKYFTSVSTVIPVPLSREREYERGFNQAELLAACLPVENSDS
SLRRKETEKQSKKTRKERLSGSNPFYFQREEMFHGQRILLVDDVYTTGITVRQIGSLLYDRGAREVSSLTLCRS

Sequences:

>Translated_234_residues
MHCLLCDEYMLETVSWYTFFVKSHKKYVCDRCERKLSYIIGEICMECGRPLELLSTVFKKDDICMDCIRWMKEEKYRPLK
NRSLYVYDDEMKEVLAQFKFRGDAELVRIFYRSFRELFQKYFTSVSTVIPVPLSREREYERGFNQAELLAACLPVENSDS
SLRRKETEKQSKKTRKERLSGSNPFYFQREEMFHGQRILLVDDVYTTGITVRQIGSLLYDRGAREVSSLTLCRS
>Mature_234_residues
MHCLLCDEYMLETVSWYTFFVKSHKKYVCDRCERKLSYIIGEICMECGRPLELLSTVFKKDDICMDCIRWMKEEKYRPLK
NRSLYVYDDEMKEVLAQFKFRGDAELVRIFYRSFRELFQKYFTSVSTVIPVPLSREREYERGFNQAELLAACLPVENSDS
SLRRKETEKQSKKTRKERLSGSNPFYFQREEMFHGQRILLVDDVYTTGITVRQIGSLLYDRGAREVSSLTLCRS

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=222, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27886; Mature: 27886

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHCLLCDEYMLETVSWYTFFVKSHKKYVCDRCERKLSYIIGEICMECGRPLELLSTVFKK
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
DDICMDCIRWMKEEKYRPLKNRSLYVYDDEMKEVLAQFKFRGDAELVRIFYRSFRELFQK
CCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
YFTSVSTVIPVPLSREREYERGFNQAELLAACLPVENSDSSLRRKETEKQSKKTRKERLS
HHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
GSNPFYFQREEMFHGQRILLVDDVYTTGITVRQIGSLLYDRGAREVSSLTLCRS
CCCCCEEEHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MHCLLCDEYMLETVSWYTFFVKSHKKYVCDRCERKLSYIIGEICMECGRPLELLSTVFKK
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
DDICMDCIRWMKEEKYRPLKNRSLYVYDDEMKEVLAQFKFRGDAELVRIFYRSFRELFQK
CCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
YFTSVSTVIPVPLSREREYERGFNQAELLAACLPVENSDSSLRRKETEKQSKKTRKERLS
HHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
GSNPFYFQREEMFHGQRILLVDDVYTTGITVRQIGSLLYDRGAREVSSLTLCRS
CCCCCEEEHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8412657; 8045879; 9384377 [H]