Click here to switch to the map view.

The map label for this gene is ycdB [H]

Identifier: 49480656

GI number: 49480656

Start: 4139621

End: 4141114

Strand: Reverse

Name: ycdB [H]

Synonym: BT9727_4077

Alternate gene names: 49480656

Gene position: 4141114-4139621 (Counterclockwise)

Preceding gene: 49481404

Following gene: 49481469

Centisome position: 79.06

GC content: 33.33

Gene sequence:

>1494_bases
ATGAATCAAAAAGATAAAGAAAGAAAAGAGCAAGTGGTTCATATTATTAACATTCCAGATGATTATAGGCTTGTTGTAGA
TGATCAAGAAGGTGTGGATGACCCATATCATCTATTATGGTGGGAGCATAAAGCGGATGAGGAGAGAACAATACAGATTA
CGTTGAATAGACATACTGGTAGTTTAATTGACTTTAGGATAGAGGATGAAAAAGCTTTTTCGAGCAGTGAGAAAGCGATA
GAGGACAATCAAGCAAGAGAGATTGCAAATACATTCTTAAAAAAATATACAAAAGAAGGCTCTGAATTTTATACATATGT
AATTGTTAAGGGTGACAAGCACGGTTGGAAAGAAGTAAATTATATGCAAGAAGTGAATGGCTATCCATTGCCGAATACAG
GGTGTGTTGTGCAAGTTCATCCTTCAGGAAATGTTGTGGATTTCCATTACAATGGACAAAAAGCGATAGAGAAAAAACCA
TCATGGCCAAATGAAATTGTTGAGGAGAACGTCGTTTTAGAAAATTTGAAAGCTAGACAAGATATGAGACTTGTATTTGT
AGATTTAACATACTCTTCATGTGAGTATGAAAACAGGGAAGAAGTAAAAGGGTACCATCTTGTATATGAACCAGAGCCTA
GTCATGCATGTATTGATGCAAGTACAGGTAAAGATTTATATGGGCCAGAACATTATAAATTACCGCCAACAGTAGTTGTT
GAAAAAATAGAAGAAGGTAACCGGCAAGATGACATATTTGAATTATTTGACTGGGATAAAGAAAGTTTTGCAAAAGTAGA
TGAGACGGAAAATGATAATGAAATAAGGATGAAATTTGTTTTGAAGGAGGAATTACAAAAACAGAAAGAAGAAAAGAATC
CATATTTAATGAATGAATTCTTTAAAAAGCATTTACCGATGCTGAAATATAATAATTTAGTTAGCGTTACAATTGATAAA
TTAACCAATGAATTAACTGGTTTTATAAAATTGACAGATGATAAAGAAGTAAAGCAAATACTATCTAGAGAGGAATGTTT
ACAAAAAGCACTTCAATTTTTGGAACAAGTTATTCCAGATATCACACAATATCTGCGTCTTTGGGAGGAACGTGAAGAAG
CTGAAGATGGGATTGAAAGATTTATTTTTTCTATATATATAAATGATATTCCGGCAGAGTATAACCAATTTATGATTAAC
ATCAATGCGGAAAACGGTGCTGTGATGCACTACTCTGGAGAGTCTAGCAACCTTATAAAAAAATTACTTACATACGAAAC
AACACCAAAAGTAACGAAAGAAGAAGCGTTAGAAATATACAGAGATGCTATCCGAGTTAAATTAGAATGGTCTATAGATC
ATGATGTAGAGGAAACGGTATATCAATTGCTGTATAAACAAACAACGTGTGAAAATTATAAAGAATTCTTCGACGGTAGT
CGAGAAGTTCGTTATATTGATGCGCATACTGGTGAGAAAATTTGGAGCAAGTAA

Upstream 100 bases:

>100_bases
ACATGGTCTTTTTCACACTGTCTACCTAAAGGGGATAATATCATCTCTAGTCTTTTTTTGTTATAATTACCTTAAATTTG
TAATAAAAGGGAGCGGTATG

Downstream 100 bases:

>100_bases
AATAAAAAGAGTTATTTTTCAAAGAAAATAACTCTTTTTATTTTTATAATTTGCCTGTTCGTTTTTCAAATGTAAATGTG
ATAGGAAGGTTGGAAGGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTGSLIDFRIEDEKAFSSSEKAI
EDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKP
SWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLVSVTIDK
LTNELTGFIKLTDDKEVKQILSREECLQKALQFLEQVIPDITQYLRLWEEREEAEDGIERFIFSIYINDIPAEYNQFMIN
INAENGAVMHYSGESSNLIKKLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
REVRYIDAHTGEKIWSK

Sequences:

>Translated_497_residues
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTGSLIDFRIEDEKAFSSSEKAI
EDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKP
SWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLVSVTIDK
LTNELTGFIKLTDDKEVKQILSREECLQKALQFLEQVIPDITQYLRLWEEREEAEDGIERFIFSIYINDIPAEYNQFMIN
INAENGAVMHYSGESSNLIKKLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
REVRYIDAHTGEKIWSK
>Mature_497_residues
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTGSLIDFRIEDEKAFSSSEKAI
EDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVNYMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKP
SWPNEIVEENVVLENLKARQDMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEFFKKHLPMLKYNNLVSVTIDK
LTNELTGFIKLTDDKEVKQILSREECLQKALQFLEQVIPDITQYLRLWEEREEAEDGIERFIFSIYINDIPAEYNQFMIN
INAENGAVMHYSGESSNLIKKLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
REVRYIDAHTGEKIWSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycdC [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005075 [H]

Pfam domain/function: PF03413 PepSY [H]

EC number: NA

Molecular weight: Translated: 58689; Mature: 58689

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTG
CCCCHHHHHHHEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCC
SLIDFRIEDEKAFSSSEKAIEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVN
CEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHH
YMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKPSWPNEIVEENVVLENLKARQ
HHHHCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHCCC
DMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
CCEEEEEEEEECCCCCCCHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEF
HHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHH
FKKHLPMLKYNNLVSVTIDKLTNELTGFIKLTDDKEVKQILSREECLQKALQFLEQVIPD
HHHCCCCEECCCEEEEEHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ITQYLRLWEEREEAEDGIERFIFSIYINDIPAEYNQFMININAENGAVMHYSGESSNLIK
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCEEEEECCCCHHHHH
KLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
HHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
REVRYIDAHTGEKIWSK
CEEEEEECCCCCHHHCC
>Mature Secondary Structure
MNQKDKERKEQVVHIINIPDDYRLVVDDQEGVDDPYHLLWWEHKADEERTIQITLNRHTG
CCCCHHHHHHHEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCC
SLIDFRIEDEKAFSSSEKAIEDNQAREIANTFLKKYTKEGSEFYTYVIVKGDKHGWKEVN
CEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHH
YMQEVNGYPLPNTGCVVQVHPSGNVVDFHYNGQKAIEKKPSWPNEIVEENVVLENLKARQ
HHHHCCCCCCCCCCEEEEECCCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHCCC
DMRLVFVDLTYSSCEYENREEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKLPPTVVV
CCEEEEEEEEECCCCCCCHHHCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
EKIEEGNRQDDIFELFDWDKESFAKVDETENDNEIRMKFVLKEELQKQKEEKNPYLMNEF
HHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHH
FKKHLPMLKYNNLVSVTIDKLTNELTGFIKLTDDKEVKQILSREECLQKALQFLEQVIPD
HHHCCCCEECCCEEEEEHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ITQYLRLWEEREEAEDGIERFIFSIYINDIPAEYNQFMININAENGAVMHYSGESSNLIK
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCEEEEECCCCHHHHH
KLLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTCENYKEFFDGS
HHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
REVRYIDAHTGEKIWSK
CEEEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]