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The map label for this gene is yddE [C]

Identifier: 49479950

GI number: 49479950

Start: 3264671

End: 3265570

Strand: Reverse

Name: yddE [C]

Synonym: BT9727_3194

Alternate gene names: 49479950

Gene position: 3265570-3264671 (Counterclockwise)

Preceding gene: 49478219

Following gene: 49479491

Centisome position: 62.35

GC content: 36.78

Gene sequence:

>900_bases
ATGAAAACTATAAACGTATTTCATTATGACGCATTTACGAATAAACCGAATATGGGGAATCCAGCAGGTATTGTATTAGA
TGCAGATGGATTAACAGAAGAGGAAATGCAGCGTATTGCTGAAAAAGTTGGATTTAACGAAACAACTTTTGTTCTTTCCT
CAGAAGTAGGAGATATAAGAATGCGCTACTTTACACCTGGTTTTGAAATGGATTTATGTGGTCATGGGACAGTAGGGACG
CTATATGCCTTGCGCGAAAAAGGTTTATTAGAAGAGAAAAGTAACCTTACGATTGAAGCGAAGGCTGGGATTTTACCGAT
ACAAATAGGTGTAAATGAAAATGGAGAAACCTTTATTAAAATGAGGCAGGCAGCACCTCAGTTTAAAGAATTTACAGGTT
CAAAAGAAGAATTAGCTCATAGTATTGGTTTAGAAGTAAATGATTTAGATGTAAGTTTACCGATTGTATATGGAAGTACG
GGGAACTGGACTGTAATTGTACCGATTAAAAATCTAGATGCGTGTGAGAGAATGAAGCCTAACAATGAGATGTTTCCATC
GGTATTAAAAGAAATACCTAACGCTTCTATTCACCCAATTTGTCTAGAAACTTATGACGAAAAGGTACATATGCATGGGC
GTCATTTCTCATCAGCTTATGCTGGAACGATTGAAGACCCAGTGACAGGAACAGCTTCAGGTGTAATGGGGGCATATTAT
GCGACGTATGTGGAGAAAGATTTTGACCGTGAAATAGAGTTAATCGTTGAACAAGGGCAAGAAATACATAAAGATGGTCG
TGTAACGATATATGTAACGAAAGATGTAGAAAGTGAGAAGTTACAAATAGATATTGCTGGAACAGCGGTATATGTGAAAG
AGTTTGAAGTTTTAATATAA

Upstream 100 bases:

>100_bases
ATGAAAAGATGCAGGGGATATTTTGGAGAAATAATTGTTCGTTGAAAACGGAGATAGAGCTTTATTATAAAATTTTTAAT
GAGGGTTAGGAGAAAAGAAA

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATCAGTGAGGGGCATCCCCACTGATTATCAGCCCTCACCAATTGGGCTGCCCAACGAATAGCGGGATA
AAAAAGAAAGCCCGGCATAC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
LYALREKGLLEEKSNLTIEAKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLDACERMKPNNEMFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDREIELIVEQGQEIHKDGRVTIYVTKDVESEKLQIDIAGTAVYVKEFEVLI

Sequences:

>Translated_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
LYALREKGLLEEKSNLTIEAKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLDACERMKPNNEMFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDREIELIVEQGQEIHKDGRVTIYVTKDVESEKLQIDIAGTAVYVKEFEVLI
>Mature_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETTFVLSSEVGDIRMRYFTPGFEMDLCGHGTVGT
LYALREKGLLEEKSNLTIEAKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPIKNLDACERMKPNNEMFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDREIELIVEQGQEIHKDGRVTIYVTKDVESEKLQIDIAGTAVYVKEFEVLI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=298, Percent_Identity=33.8926174496644, Blast_Score=142, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6321818, Length=295, Percent_Identity=26.7796610169492, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33252; Mature: 33252

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTLYALREKGLLEEKSNLTIEAKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCHHEEE
MRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPIKNLDACERMKP
EHHHCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEMFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATYVEKDFDREIELIVEQGQEIHKDGRVTIYVTKDVESEKLQIDIAGTAVYVKEFEVLI
HHHHHHCCCHHHHHHHHCCHHHCCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC
>Mature Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETTFVLSSEVGDIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEE
MRYFTPGFEMDLCGHGTVGTLYALREKGLLEEKSNLTIEAKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCHHEEE
MRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPIKNLDACERMKP
EHHHCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEMFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATYVEKDFDREIELIVEQGQEIHKDGRVTIYVTKDVESEKLQIDIAGTAVYVKEFEVLI
HHHHHHCCCHHHHHHHHCCHHHCCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]