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The map label for this gene is ydeB [H]

Identifier: 49479453

GI number: 49479453

Start: 3481124

End: 3481600

Strand: Reverse

Name: ydeB [H]

Synonym: BT9727_3401

Alternate gene names: 49479453

Gene position: 3481600-3481124 (Counterclockwise)

Preceding gene: 49478308

Following gene: 49478307

Centisome position: 66.47

GC content: 31.87

Gene sequence:

>477_bases
ATGGAGGTGGATTATTTGTTTCAAATTGGCGATAACATTGTTTATCCAATGCAAGGAGCAGGTATAATTAAAGCCATAGA
AGAGAAGGAAATTGCAGGAAAAAAACAACAGTATTATGTTATAAAAATGTCGGCTAGTAATATGGAAATAATGATTCCAG
AAGGGAAAATATTGAATTCAAATATACGACCAGTTACAGATATCACGGCATTAATACACATAATAGATATTTTTCAGCAT
GGAGAATCAGATAGATTACTTACGTGGAAACAAAGGTACAAAGTGAATACTGATAAAATAAAAACAGGTAAAATGCAAGA
AGGTGCTGAGGTTGTGCGTGATTTAATGCGTATACAGAAAGAAAAGGCACTTAATGCAAGCGAAAAGAAAATGTTAGATA
ACGCACATGAATTTTTGATTAGTGAACTGGGATTAATTGAAGGTATCACAGAAAATCAAATAAAAAGCTTTTGTTAA

Upstream 100 bases:

>100_bases
TTCTTAGTTTATAAGGATTGACACGTAAAATGATTTTGTGATAAAATAAAAATTTTGCTAAAAAAACGAATGTGTGTTAA
ACTTGAGAAGGTTACCATAT

Downstream 100 bases:

>100_bases
GGTTCATTACAAATAATATATTGCATCCCAAAAAAGGTTTTGAATTTTTTGGGAACATAATTATAGACAATCAATCATTT
CAAAGACATTCAACTCTTTC

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVTDITALIHIIDIFQH
GESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITENQIKSFC

Sequences:

>Translated_158_residues
MEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVTDITALIHIIDIFQH
GESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITENQIKSFC
>Mature_158_residues
MEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNSNIRPVTDITALIHIIDIFQH
GESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITENQIKSFC

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18074; Mature: 18074

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNS
CCCEEEEECCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCEEECC
NIRPVTDITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQK
CCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
EKALNASEKKMLDNAHEFLISELGLIEGITENQIKSFC
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGKKQQYYVIKMSASNMEIMIPEGKILNS
CCCEEEEECCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCEEECC
NIRPVTDITALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQK
CCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
EKALNASEKKMLDNAHEFLISELGLIEGITENQIKSFC
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]