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The map label for this gene is rbfA

Identifier: 49478390

GI number: 49478390

Start: 3645823

End: 3646179

Strand: Reverse

Name: rbfA

Synonym: BT9727_3552

Alternate gene names: 49478390

Gene position: 3646179-3645823 (Counterclockwise)

Preceding gene: 49479410

Following gene: 49478389

Centisome position: 69.61

GC content: 35.57

Gene sequence:

>357_bases
ATGAAATTACGTGCAAACCGTGTAGGCGAGCAAATGAAAAAAGAATTAGGCGACATCATCAGTCGTAAAATTAAAGATCC
ACGTGTCGGATTTGTTACTGTAACAGATGTACAAGTGAGTGGAGATTTACAAATTGCTACAGTGTATATTTCTGTTTTAG
GTGATGAAGAACAGAAAGAAAATACACTAAAAGGTTTAGCGAAGGCAAAAGGCTTCATTCGTTCAGAAATTGGCCAACGT
ATTCGTCTTCGTAAAACGCCTGAAATTTCCTTTGAATTTGATGAGTCTATCGGATATGGTCATCGAATTGATACACTTTT
ACATCAAATTAATAAAGACGGTAAACGTGAAGAATAA

Upstream 100 bases:

>100_bases
TGAAAAAGAAATGAATCGTGTACTTGAGTACATCGATTCATTTCCTGAAATTGAACGTACGATAACACAATTGGAATGGT
ATTGAATGAGGTGAAGAGTT

Downstream 100 bases:

>100_bases
TGGATAGACATTTGTCTATCCATTTTTTCAATGTAAAATAAGTTTTAGGTAATAATTATGAAAGAATTACGATGAGGTGA
ACATATATGGAAGGTGTAGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSGDLQIATVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEISFEFDESIGYGHRIDTLLHQINKDGKREE

Sequences:

>Translated_118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSGDLQIATVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEISFEFDESIGYGHRIDTLLHQINKDGKREE
>Mature_118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSGDLQIATVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEISFEFDESIGYGHRIDTLLHQINKDGKREE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=41.9642857142857, Blast_Score=89, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13427; Mature: 13427

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSGDLQIATVYISVLGDEEQKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEEEHHCCCHHHH
NTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHQINKDGKREE
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSGDLQIATVYISVLGDEEQKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEEEHHCCCHHHH
NTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHQINKDGKREE
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA