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The map label for this gene is ydcM [C]

Identifier: 49478326

GI number: 49478326

Start: 3522088

End: 3523200

Strand: Reverse

Name: ydcM [C]

Synonym: BT9727_3437

Alternate gene names: 49478326

Gene position: 3523200-3522088 (Counterclockwise)

Preceding gene: 49479214

Following gene: 49478325

Centisome position: 67.27

GC content: 37.11

Gene sequence:

>1113_bases
ATGACAAAGCAGAATAAGGCGTACAAGTTTCGTCTGTATCCAACAGAAGAACAAGCACATCTCATACGTAAAACGTTCGG
GTGTGTACGCTTTGTATATAATAAAATGCTGGCTGAACGAAAGGAAGTATATGAAAAACACAAAGCGAATAAGGAAGAAC
TGAAGGAGCAAAAATTTTCTACACCTGCAAAATACAAAGTGGAGTATGAATGGTTGAAAGAAGTTGATTCATTGGCATTG
GCCAACGCTCAATTAAACTTGCAAACTGCTTATAAGAATTTTTTTAGTGGTCAAAGTGATTTTCCTACATTCAAAAGTAA
AAAGAGTAGAAAATCCTATACAACGAATCGAGTAAACGGAAATATTATGTTATTTCATGGTTATATCAAATTACCAAAAT
TGAAAATGGTGAAACTGAAGCAACATAGAGAAATCCCGCCAAAACATATCATCAAATCGTGTACGATTTCGATGACACCT
ACTGGTAAGTATTACGTGTCTATTTTGACCGAATATGAAAAAGAAATCACTCCAAAAGAAGTAGAACGTGTAGTTGGATT
AGACTTCGCAATGGTTGAATTGTACGTGAGTAGCGAAGATGAGAAAGCCAATTATCCTCGCTTTTATCGTCAGATGTTAG
AGAAATTAGCGAAGGCACAACGAGTATTAGCAAGACGTGTGAAAGGTTCAGAGCGCTGGAATAAACAACGCATTCGTGTA
GCGAAATTGCATGAAAAGGTCGCCAATCAACGTAAAAATTTTCTTCATCACAAGTCTAAAGAATTAGCTACGAGTTTTGA
CGTTGTAGCAATCGAAGACTTACATATGAAAGGAATGTCAAGAGCACTTAGATTTGGTAAGAGTGTAGCGGACAACGGTT
GGCGGATGTTCACGGCATTTTTAGCATATAAGCTACAAGAACAAGGAAAACAACTTGTAAAGATAGATAAATGGTTTCCT
TCTACAAAGATGTGTAGTCGTTGTGGAAATAAAAAAGAAATGCCATTATGTAAACGCACGTATGCGTGTTCGTGTGGACT
CACAATCGGCCGTGATTATAACGCAGCGATCAATATCAAAAAAGAAGCCATACGCTTATTAGCGCTGGCATAA

Upstream 100 bases:

>100_bases
GGTATAACAATGAAAGTAGATAATAATCATGTAGTGTTCAGGTCCGTGGAATCACCGTCATAGCTTATGGGAAATGAAGC
GAAAAGTGAGGTGAATGGAT

Downstream 100 bases:

>100_bases
ATAGTAACAAAATAACCTTTGGAACAGGGGAGTTAGCTCGGCTGTCATAGGACAAATTCGTTAGCTATCAAAAGTAGCGA
TGAACCGAGAAGCCCCCCAC

Product: IS605 family transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MTKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERKEVYEKHKANKEELKEQKFSTPAKYKVEYEWLKEVDSLAL
ANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISMTP
TGKYYVSILTEYEKEITPKEVERVVGLDFAMVELYVSSEDEKANYPRFYRQMLEKLAKAQRVLARRVKGSERWNKQRIRV
AKLHEKVANQRKNFLHHKSKELATSFDVVAIEDLHMKGMSRALRFGKSVADNGWRMFTAFLAYKLQEQGKQLVKIDKWFP
STKMCSRCGNKKEMPLCKRTYACSCGLTIGRDYNAAINIKKEAIRLLALA

Sequences:

>Translated_370_residues
MTKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERKEVYEKHKANKEELKEQKFSTPAKYKVEYEWLKEVDSLAL
ANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISMTP
TGKYYVSILTEYEKEITPKEVERVVGLDFAMVELYVSSEDEKANYPRFYRQMLEKLAKAQRVLARRVKGSERWNKQRIRV
AKLHEKVANQRKNFLHHKSKELATSFDVVAIEDLHMKGMSRALRFGKSVADNGWRMFTAFLAYKLQEQGKQLVKIDKWFP
STKMCSRCGNKKEMPLCKRTYACSCGLTIGRDYNAAINIKKEAIRLLALA
>Mature_369_residues
TKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERKEVYEKHKANKEELKEQKFSTPAKYKVEYEWLKEVDSLALA
NAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISMTPT
GKYYVSILTEYEKEITPKEVERVVGLDFAMVELYVSSEDEKANYPRFYRQMLEKLAKAQRVLARRVKGSERWNKQRIRVA
KLHEKVANQRKNFLHHKSKELATSFDVVAIEDLHMKGMSRALRFGKSVADNGWRMFTAFLAYKLQEQGKQLVKIDKWFPS
TKMCSRCGNKKEMPLCKRTYACSCGLTIGRDYNAAINIKKEAIRLLALA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=368, Percent_Identity=29.3478260869565, Blast_Score=147, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43335; Mature: 43204

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERKEVYEKHKANKEELKEQKFS
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
TPAKYKVEYEWLKEVDSLALANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNG
CCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHCHHHHHCCCCCCCCC
NIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISMTPTGKYYVSILTEYEKEITPKE
CEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCEEEECCCCHHHHHHHHHHHHCCCHHH
VERVVGLDFAMVELYVSSEDEKANYPRFYRQMLEKLAKAQRVLARRVKGSERWNKQRIRV
HHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AKLHEKVANQRKNFLHHKSKELATSFDVVAIEDLHMKGMSRALRFGKSVADNGWRMFTAF
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHCCCHHHHHHH
LAYKLQEQGKQLVKIDKWFPSTKMCSRCGNKKEMPLCKRTYACSCGLTIGRDYNAAINIK
HHHHHHHHCHHHEEHHHCCCCHHHHHHCCCCCCCCHHHHHHHEECCCEECCCCCCEEEEH
KEAIRLLALA
HHHHHHHHCC
>Mature Secondary Structure 
TKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERKEVYEKHKANKEELKEQKFS
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
TPAKYKVEYEWLKEVDSLALANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNG
CCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHCHHHHHCCCCCCCCC
NIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISMTPTGKYYVSILTEYEKEITPKE
CEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCEEEECCCCHHHHHHHHHHHHCCCHHH
VERVVGLDFAMVELYVSSEDEKANYPRFYRQMLEKLAKAQRVLARRVKGSERWNKQRIRV
HHHHHCCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AKLHEKVANQRKNFLHHKSKELATSFDVVAIEDLHMKGMSRALRFGKSVADNGWRMFTAF
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHCCCHHHHHHH
LAYKLQEQGKQLVKIDKWFPSTKMCSRCGNKKEMPLCKRTYACSCGLTIGRDYNAAINIK
HHHHHHHHCHHHEEHHHCCCCHHHHHHCCCCCCCCHHHHHHHEECCCEECCCCCCEEEEH
KEAIRLLALA
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]