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The map label for this gene is yhcM [H]

Identifier: 49476307

GI number: 49476307

Start: 1915698

End: 1916903

Strand: Reverse

Name: yhcM [H]

Synonym: BH16580

Alternate gene names: 49476307

Gene position: 1916903-1915698 (Counterclockwise)

Preceding gene: 49476308

Following gene: 49476306

Centisome position: 99.27

GC content: 37.56

Gene sequence:

>1206_bases
ATGATTTTAGTCTCAACACGCTATCAAGAGCTGGTATCTAAAGGAGAAATCAGTTTGGACCCAGCTCAATTGGCTTTAAC
AGAACATTTTGATCATTTATTACAAAATGTTGCGGAACAAAACATTTCTCGGCCGTGGTGGGCTTTCTGGCATTTTTTTA
AGAGAAAAAAACAAAACTCTGTTGCAAAACAAAAGAGTGCTGCTAATCCCTTTCAAGGATTGTATATTTATGGTGAAGTA
GGACGAGGAAAAACCATGCTGATGGATTTGTTCTTTTCTTGTTTGCCACAAAAACGTAAAAAACGTGCCCATTTTAATGA
TTTTATGGCCGATGTGCATGAGCGCATTAATATTTATCGTCAAGCATCAAAAGATGGAAAAACTGGACAAAAGACCCCTA
TTTTAGCCGTTGTTGAAGATCTTGCACAAGAAGCACAGGTCCTTTGTTTTGACGAATTTAGCGTAACGGATATCGCTGAT
GCCATGGTGTTGGGACGTCTTATCTCTGCCTTATTTGATAAAGGGATTTTCTTTGTTGCAACTTCAAATGTTGCTCCTGA
TAATCTTTATTATAACGGTTTAAATCGAGAGCTCTTTTTGCCTTTTATCCAAGTTTTAAAAGCACATGTTCATGTGATCA
ATCTTGGTGCAAAAACAGATTATCGTCTTGAAAAATCAAATTTTCAACAGGTGTATATAACGCCACTAGGGTTGGAAGCA
AATCAACGTATGGATCAGGCGTGGATGCTGGTCCTGAAAGGGCAAAAGGAAACATCTGATGAATTCTCCATAAAAGGGCG
TGTTATTCATATTCCACGCTCTGGTGTTGGTTGTGCACGCTTTGATTATCAAGATTTATGTGCAAAGCCTTTAGCAGCAG
TTGAGTATTTAGCATTAGGGGAACGGTATCATACGATTTTTGTCGATAATGTACCAGTGATGGATGATACATGTCGCAAT
GAAACAAAACGGTTTATTTTGTTTATTGATGTTCTTTATGAACGCTACATAAGATTGTTTATGTCAGCGGCGGTGAAGCT
TGATGATTTGTATAAAGGGTATGCGCAAACGTCTGAAACATTTGAATTTCAAAGAACACAATCGCGTCTTTTCGAGATGC
AAAGTCAGGATTATTTAAAAATTTGGGCAGAACGTTTTTGTGAAGGAGAACAATTAATCAGTGCTTTACCTTTACGTAAG
CTGTAA

Upstream 100 bases:

>100_bases
TTTTAAGCCGTTAGATCATCTTTAGCCATTTATGAAAAAAAACAGATATATTAAGGAAGTCTTGAATTTCATTGATGGCA
GTTGAAAAAAGGTTGTTTGG

Downstream 100 bases:

>100_bases
AAACAATAACTCTTTGAATTTAAAAGAAGTGTAATAATTTTGTTGTATTTTTTTTAAATTCACTTTATCGATACACAATA
GTAGTTTTCTCATTGCCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MILVSTRYQELVSKGEISLDPAQLALTEHFDHLLQNVAEQNISRPWWAFWHFFKRKKQNSVAKQKSAANPFQGLYIYGEV
GRGKTMLMDLFFSCLPQKRKKRAHFNDFMADVHERINIYRQASKDGKTGQKTPILAVVEDLAQEAQVLCFDEFSVTDIAD
AMVLGRLISALFDKGIFFVATSNVAPDNLYYNGLNRELFLPFIQVLKAHVHVINLGAKTDYRLEKSNFQQVYITPLGLEA
NQRMDQAWMLVLKGQKETSDEFSIKGRVIHIPRSGVGCARFDYQDLCAKPLAAVEYLALGERYHTIFVDNVPVMDDTCRN
ETKRFILFIDVLYERYIRLFMSAAVKLDDLYKGYAQTSETFEFQRTQSRLFEMQSQDYLKIWAERFCEGEQLISALPLRK
L

Sequences:

>Translated_401_residues
MILVSTRYQELVSKGEISLDPAQLALTEHFDHLLQNVAEQNISRPWWAFWHFFKRKKQNSVAKQKSAANPFQGLYIYGEV
GRGKTMLMDLFFSCLPQKRKKRAHFNDFMADVHERINIYRQASKDGKTGQKTPILAVVEDLAQEAQVLCFDEFSVTDIAD
AMVLGRLISALFDKGIFFVATSNVAPDNLYYNGLNRELFLPFIQVLKAHVHVINLGAKTDYRLEKSNFQQVYITPLGLEA
NQRMDQAWMLVLKGQKETSDEFSIKGRVIHIPRSGVGCARFDYQDLCAKPLAAVEYLALGERYHTIFVDNVPVMDDTCRN
ETKRFILFIDVLYERYIRLFMSAAVKLDDLYKGYAQTSETFEFQRTQSRLFEMQSQDYLKIWAERFCEGEQLISALPLRK
L
>Mature_401_residues
MILVSTRYQELVSKGEISLDPAQLALTEHFDHLLQNVAEQNISRPWWAFWHFFKRKKQNSVAKQKSAANPFQGLYIYGEV
GRGKTMLMDLFFSCLPQKRKKRAHFNDFMADVHERINIYRQASKDGKTGQKTPILAVVEDLAQEAQVLCFDEFSVTDIAD
AMVLGRLISALFDKGIFFVATSNVAPDNLYYNGLNRELFLPFIQVLKAHVHVINLGAKTDYRLEKSNFQQVYITPLGLEA
NQRMDQAWMLVLKGQKETSDEFSIKGRVIHIPRSGVGCARFDYQDLCAKPLAAVEYLALGERYHTIFVDNVPVMDDTCRN
ETKRFILFIDVLYERYIRLFMSAAVKLDDLYKGYAQTSETFEFQRTQSRLFEMQSQDYLKIWAERFCEGEQLISALPLRK
L

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=355, Percent_Identity=36.6197183098592, Blast_Score=223, Evalue=2e-58,
Organism=Escherichia coli, GI1789627, Length=322, Percent_Identity=41.304347826087, Blast_Score=253, Evalue=2e-68,
Organism=Caenorhabditis elegans, GI17505769, Length=426, Percent_Identity=33.3333333333333, Blast_Score=239, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6320783, Length=330, Percent_Identity=35.1515151515151, Blast_Score=186, Evalue=4e-48,
Organism=Drosophila melanogaster, GI20129913, Length=424, Percent_Identity=32.7830188679245, Blast_Score=202, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 46372; Mature: 46372

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILVSTRYQELVSKGEISLDPAQLALTEHFDHLLQNVAEQNISRPWWAFWHFFKRKKQNS
CEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VAKQKSAANPFQGLYIYGEVGRGKTMLMDLFFSCLPQKRKKRAHFNDFMADVHERINIYR
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
QASKDGKTGQKTPILAVVEDLAQEAQVLCFDEFSVTDIADAMVLGRLISALFDKGIFFVA
HHCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEE
TSNVAPDNLYYNGLNRELFLPFIQVLKAHVHVINLGAKTDYRLEKSNFQQVYITPLGLEA
ECCCCCCCCEECCCCHHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCEEEEEEECCCH
NQRMDQAWMLVLKGQKETSDEFSIKGRVIHIPRSGVGCARFDYQDLCAKPLAAVEYLALG
HHHHHHHHEEEEECCCCCCCCEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
ERYHTIFVDNVPVMDDTCRNETKRFILFIDVLYERYIRLFMSAAVKLDDLYKGYAQTSET
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FEFQRTQSRLFEMQSQDYLKIWAERFCEGEQLISALPLRKL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCCCC
>Mature Secondary Structure
MILVSTRYQELVSKGEISLDPAQLALTEHFDHLLQNVAEQNISRPWWAFWHFFKRKKQNS
CEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VAKQKSAANPFQGLYIYGEVGRGKTMLMDLFFSCLPQKRKKRAHFNDFMADVHERINIYR
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
QASKDGKTGQKTPILAVVEDLAQEAQVLCFDEFSVTDIADAMVLGRLISALFDKGIFFVA
HHCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEE
TSNVAPDNLYYNGLNRELFLPFIQVLKAHVHVINLGAKTDYRLEKSNFQQVYITPLGLEA
ECCCCCCCCEECCCCHHHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCEEEEEEECCCH
NQRMDQAWMLVLKGQKETSDEFSIKGRVIHIPRSGVGCARFDYQDLCAKPLAAVEYLALG
HHHHHHHHEEEEECCCCCCCCEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
ERYHTIFVDNVPVMDDTCRNETKRFILFIDVLYERYIRLFMSAAVKLDDLYKGYAQTSET
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FEFQRTQSRLFEMQSQDYLKIWAERFCEGEQLISALPLRKL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]