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The map label for this gene is holA

Identifier: 49476274

GI number: 49476274

Start: 1876043

End: 1877095

Strand: Reverse

Name: holA

Synonym: BH16220

Alternate gene names: NA

Gene position: 1877095-1876043 (Counterclockwise)

Preceding gene: 49476275

Following gene: 49476273

Centisome position: 97.21

GC content: 40.27

Gene sequence:

>1053_bases
TTGGTTCAGAAAAAAGCGCATGAAGTTGATCATTTTCTAAAGCGTTTTTCGCGTTCTTTTCCTATTGTTCTTATTTACGG
ACCGGATCGCGGTCTTGTTTGCGAGCGTGTACAACATTTTATTAAGCTCACGCAGATAGCTGTAGAAGATCCTTTTTGCA
GTGTTCGTTTGGATGCTGCTGAAATTGATAAAGATCCTGCTCGATTGCTAGATGAGGCACGTACTTTATCTCTTTTGGGG
GGTGATCGTTTGATATGGGTGTCTAATGGCGCTAATCAAAAAAACTTCCTTGATGCACTTAAGATTTTAATTAAAGAACC
ACCAGAGAAAAGTTTTATTCTCATTGAGGCAGGGGATCTCAAAAAAGGAACAGGGCTCCGAAATATTATTGAGACCGCAT
CGATAGCCATGGCTCTGCCTTGTTTTGCGGATGATATTCGTGCTCTCGATGCGTTAATTGATGAAGTTTTGGGTCATTTT
AAGATGACCCTTGCTTTGGATGCACGTAAGTGGTTGCTTCATCATTTGGGAGGGGATCATCTTGTTTCGCGTAGTGAATT
GGAAAAGCTCTGTCTTTATACCTTGGAGAAAAAACATATTATTCTTGAGGATGTGAAAGCTGTGGTGAGCGATGTTAGTG
CGCTTTCTCAAGATGAAGTGATCGATACCGTTTTATTAGGAGATGTGGCAGGTTTTGAAGCGCATTTTAGCCGATATGCA
ACACTGCAAGGCGCACTTTTTTTTATTTTGAGTACTGCGCAAAGACATTTTCAGCAATTACAGATTTTGCGTTATCAAAT
AGATGTTGAGGGTAAAAATATGTTTACAGCGATTTCTCAAGCGCAACCGCCGATTTTTTTTCAGCGGAAAAAAACCATTG
AACGTGCTTTGAGTTATTGGGGAAGAGAACAAATTTCTTATGCCATGGAACGAATCCAACATGCTGTTTTAGAGAGTCGT
AAAAATCCGCTTTTGGGTGAAGCTATTATTCGTCAAGCTTTGTTGAGACTAGCAATTGTTGCGCGGCGCCAAATGACTGC
TTTAAAATATTGA

Upstream 100 bases:

>100_bases
GAAGAACGTAAAGGTTTGAATGTCAACGATTTAATTGGTATGTTTCAAAAAGTGCGTGGGGAAGCCCTTGATGATGATGA
ACTATTAATGGATTAATATT

Downstream 100 bases:

>100_bases
ACTTGGTTGGAAAAGTGAATTTTCCTCATATTTGCTTGATTTATAGCATCGTAGTGAAGAAAAAAATGTTTTTAGAATCA
CGGTATCTTTTTGCACGAGT

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Delta Subunit

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MVQKKAHEVDHFLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDAAEIDKDPARLLDEARTLSLLG
GDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGDLKKGTGLRNIIETASIAMALPCFADDIRALDALIDEVLGHF
KMTLALDARKWLLHHLGGDHLVSRSELEKLCLYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRYA
TLQGALFFILSTAQRHFQQLQILRYQIDVEGKNMFTAISQAQPPIFFQRKKTIERALSYWGREQISYAMERIQHAVLESR
KNPLLGEAIIRQALLRLAIVARRQMTALKY

Sequences:

>Translated_350_residues
MVQKKAHEVDHFLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDAAEIDKDPARLLDEARTLSLLG
GDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGDLKKGTGLRNIIETASIAMALPCFADDIRALDALIDEVLGHF
KMTLALDARKWLLHHLGGDHLVSRSELEKLCLYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRYA
TLQGALFFILSTAQRHFQQLQILRYQIDVEGKNMFTAISQAQPPIFFQRKKTIERALSYWGREQISYAMERIQHAVLESR
KNPLLGEAIIRQALLRLAIVARRQMTALKY
>Mature_350_residues
MVQKKAHEVDHFLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDAAEIDKDPARLLDEARTLSLLG
GDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGDLKKGTGLRNIIETASIAMALPCFADDIRALDALIDEVLGHF
KMTLALDARKWLLHHLGGDHLVSRSELEKLCLYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRYA
TLQGALFFILSTAQRHFQQLQILRYQIDVEGKNMFTAISQAQPPIFFQRKKTIERALSYWGREQISYAMERIQHAVLESR
KNPLLGEAIIRQALLRLAIVARRQMTALKY

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 39696; Mature: 39696

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKKAHEVDHFLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDAA
CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHH
EIDKDPARLLDEARTLSLLGGDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGDL
HCCCCHHHHHHHHHHHHEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
KKGTGLRNIIETASIAMALPCFADDIRALDALIDEVLGHFKMTLALDARKWLLHHLGGDH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LVSRSELEKLCLYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRYA
HCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLQGALFFILSTAQRHFQQLQILRYQIDVEGKNMFTAISQAQPPIFFQRKKTIERALSYW
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GREQISYAMERIQHAVLESRKNPLLGEAIIRQALLRLAIVARRQMTALKY
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVQKKAHEVDHFLKRFSRSFPIVLIYGPDRGLVCERVQHFIKLTQIAVEDPFCSVRLDAA
CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHH
EIDKDPARLLDEARTLSLLGGDRLIWVSNGANQKNFLDALKILIKEPPEKSFILIEAGDL
HCCCCHHHHHHHHHHHHEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
KKGTGLRNIIETASIAMALPCFADDIRALDALIDEVLGHFKMTLALDARKWLLHHLGGDH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LVSRSELEKLCLYTLEKKHIILEDVKAVVSDVSALSQDEVIDTVLLGDVAGFEAHFSRYA
HCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLQGALFFILSTAQRHFQQLQILRYQIDVEGKNMFTAISQAQPPIFFQRKKTIERALSYW
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GREQISYAMERIQHAVLESRKNPLLGEAIIRQALLRLAIVARRQMTALKY
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA