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The map label for this gene is pal [H]

Identifier: 49476137

GI number: 49476137

Start: 1699239

End: 1699763

Strand: Reverse

Name: pal [H]

Synonym: BH14790

Alternate gene names: 49476137

Gene position: 1699763-1699239 (Counterclockwise)

Preceding gene: 49476138

Following gene: 49476136

Centisome position: 88.02

GC content: 39.62

Gene sequence:

>525_bases
ATGCGCTTTCTCAAAAATATTATCTTTCAGCCCCTAACAGTGGTCCTTTTCTTCTCACTGTCTCTTGTGGGGTGCGGCGA
CAAAAAAAATGTTGGTGCACTTAGCGGTATAAATGGCGCTTTTTTGAATAATGCGGGTTTTAATCAGGCAACTTTAGGTT
CAAGTCAGGATTTTACTGTTAATGTTGGAGATCGTGTTTTCTTTAGTCTTGATTCTTCTTCTATTGAGCCTGACGCCGAA
GCTATTTTAATGCGTCAAGCAGAATGGTTATTGCGTTATCCCTTCTATTCTATTGTCATTGAAGGCCATGCTGATGAACG
TGGTACGCGTGAATATAATTTGGCTCTTGGTCAGCGCCGAGCCGTTGCTGTACGCAATTATTTAATTTCTCTTGGTGTTT
CTGCACAACGGATTCAAACAATTTCTTATGGAAAAGAAAGACCTGTAGCAGTGTGTGACGATATTTCTTGTTGGAACCAG
AATAGACGTGCTGTTACTACGATAAATAATATAAACCGTAATTAA

Upstream 100 bases:

>100_bases
TATTTTTTCTTCATTAGGGATTAAAAGTTATCCCTGAGGCGCTCTTTAAAGAATATATCCACTTCAATAGTGATGTTTAC
TAACTAAGGAAAATCAGTAC

Downstream 100 bases:

>100_bases
AAAAATGGTTTGCTTAAACTATTGGACTGATTCTTAAGAGGAGAAAAGCATGTGGATGTATTGTAGAAAAAAATTGAAAA
TTGTCTTTTATATGGCGATA

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MRFLKNIIFQPLTVVLFFSLSLVGCGDKKNVGALSGINGAFLNNAGFNQATLGSSQDFTVNVGDRVFFSLDSSSIEPDAE
AILMRQAEWLLRYPFYSIVIEGHADERGTREYNLALGQRRAVAVRNYLISLGVSAQRIQTISYGKERPVAVCDDISCWNQ
NRRAVTTINNINRN

Sequences:

>Translated_174_residues
MRFLKNIIFQPLTVVLFFSLSLVGCGDKKNVGALSGINGAFLNNAGFNQATLGSSQDFTVNVGDRVFFSLDSSSIEPDAE
AILMRQAEWLLRYPFYSIVIEGHADERGTREYNLALGQRRAVAVRNYLISLGVSAQRIQTISYGKERPVAVCDDISCWNQ
NRRAVTTINNINRN
>Mature_174_residues
MRFLKNIIFQPLTVVLFFSLSLVGCGDKKNVGALSGINGAFLNNAGFNQATLGSSQDFTVNVGDRVFFSLDSSSIEPDAE
AILMRQAEWLLRYPFYSIVIEGHADERGTREYNLALGQRRAVAVRNYLISLGVSAQRIQTISYGKERPVAVCDDISCWNQ
NRRAVTTINNINRN

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=100, Percent_Identity=49, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19369; Mature: 19369

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLKNIIFQPLTVVLFFSLSLVGCGDKKNVGALSGINGAFLNNAGFNQATLGSSQDFTV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEE
NVGDRVFFSLDSSSIEPDAEAILMRQAEWLLRYPFYSIVIEGHADERGTREYNLALGQRR
ECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCHH
AVAVRNYLISLGVSAQRIQTISYGKERPVAVCDDISCWNQNRRAVTTINNINRN
HHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEECCCHHCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MRFLKNIIFQPLTVVLFFSLSLVGCGDKKNVGALSGINGAFLNNAGFNQATLGSSQDFTV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEE
NVGDRVFFSLDSSSIEPDAEAILMRQAEWLLRYPFYSIVIEGHADERGTREYNLALGQRR
ECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCHH
AVAVRNYLISLGVSAQRIQTISYGKERPVAVCDDISCWNQNRRAVTTINNINRN
HHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEECCCHHCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]