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The map label for this gene is exbD [H]

Identifier: 49476129

GI number: 49476129

Start: 1687670

End: 1688251

Strand: Reverse

Name: exbD [H]

Synonym: BH14700

Alternate gene names: 49476129

Gene position: 1688251-1687670 (Counterclockwise)

Preceding gene: 49476130

Following gene: 49476118

Centisome position: 87.43

GC content: 40.72

Gene sequence:

>582_bases
ATGAAAGCAAACTTTAATGAAGATTGGGATCTCGATGAGAGTGGGTTGCACAACGAGATCAATGTTACCCCTTTCATTGA
TGTCGTTTTAGTGTTGCTTATTGTTTTTATGGTTGCTGCACCTTTGGCCACCTCTGTTATTCCTGTTCAATTACCTTCCA
TTACTCAGGCACCTTCTGTGATTCAGCCTGACGAACCTCTTTATGTGACCTTGCAAAAAGATCATTCTCTTTATGTTGGT
GATCATCTTGTCAGCAAAACAACCTTTGTAGAAGCCTTGTTGAAGGAAACAAATCAGAATCTAGAAACAAAGGTTTTGAT
CAAAGCCGATAGCGAAATCGATTATGGGACTGTGGTGGATTTGCTTAATCAAATACGTACTGCTGGATATACCAAAGTCG
GTCTTATAGGATTGCAAAAATCTACCAATATTTCTGCACGAGGTGTAAAAAATAATAAAACGGCAGGTGCGGTAGAAGCT
ACGGAGATAAATGTTACAGGCGATGCTGGCGTGGTAGCGAAAAGCGGTGAGGTGGTAAACGCCAATACTGCTACGATGGA
AATTGTTTCTCCTGGAGAATAA

Upstream 100 bases:

>100_bases
TGAGCGGTTATCGCAATGATTTGGGTGATATCGCTGCTGCACTTGAGAGACTCTTGAGCCGTGAACTCGATCGATATAGA
CAACAGAAAAGTCATAAACA

Downstream 100 bases:

>100_bases
ATAGACTGTTAAGGGTGTGCTTTGCCATTTATTGGCTGCTTACGTGTGTTCTGTTGTGCTAAATTCCCATAGCATTTAGT
TTTTGGCGCCTCGATAGTGG

Product: biopolymer transport exbD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKANFNEDWDLDESGLHNEINVTPFIDVVLVLLIVFMVAAPLATSVIPVQLPSITQAPSVIQPDEPLYVTLQKDHSLYVG
DHLVSKTTFVEALLKETNQNLETKVLIKADSEIDYGTVVDLLNQIRTAGYTKVGLIGLQKSTNISARGVKNNKTAGAVEA
TEINVTGDAGVVAKSGEVVNANTATMEIVSPGE

Sequences:

>Translated_193_residues
MKANFNEDWDLDESGLHNEINVTPFIDVVLVLLIVFMVAAPLATSVIPVQLPSITQAPSVIQPDEPLYVTLQKDHSLYVG
DHLVSKTTFVEALLKETNQNLETKVLIKADSEIDYGTVVDLLNQIRTAGYTKVGLIGLQKSTNISARGVKNNKTAGAVEA
TEINVTGDAGVVAKSGEVVNANTATMEIVSPGE
>Mature_193_residues
MKANFNEDWDLDESGLHNEINVTPFIDVVLVLLIVFMVAAPLATSVIPVQLPSITQAPSVIQPDEPLYVTLQKDHSLYVG
DHLVSKTTFVEALLKETNQNLETKVLIKADSEIDYGTVVDLLNQIRTAGYTKVGLIGLQKSTNISARGVKNNKTAGAVEA
TEINVTGDAGVVAKSGEVVNANTATMEIVSPGE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=137, Percent_Identity=42.3357664233577, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 20673; Mature: 20673

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKANFNEDWDLDESGLHNEINVTPFIDVVLVLLIVFMVAAPLATSVIPVQLPSITQAPSV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCC
IQPDEPLYVTLQKDHSLYVGDHLVSKTTFVEALLKETNQNLETKVLIKADSEIDYGTVVD
CCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
LLNQIRTAGYTKVGLIGLQKSTNISARGVKNNKTAGAVEATEINVTGDAGVVAKSGEVVN
HHHHHHHCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEE
ANTATMEIVSPGE
CCCEEEEEECCCC
>Mature Secondary Structure
MKANFNEDWDLDESGLHNEINVTPFIDVVLVLLIVFMVAAPLATSVIPVQLPSITQAPSV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCC
IQPDEPLYVTLQKDHSLYVGDHLVSKTTFVEALLKETNQNLETKVLIKADSEIDYGTVVD
CCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
LLNQIRTAGYTKVGLIGLQKSTNISARGVKNNKTAGAVEATEINVTGDAGVVAKSGEVVN
HHHHHHHCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEE
ANTATMEIVSPGE
CCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]