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The map label for this gene is ddpA [H]

Identifier: 49475938

GI number: 49475938

Start: 1363267

End: 1364898

Strand: Reverse

Name: ddpA [H]

Synonym: BH12230

Alternate gene names: 49475938

Gene position: 1364898-1363267 (Counterclockwise)

Preceding gene: 49475940

Following gene: 49475937

Centisome position: 70.68

GC content: 38.36

Gene sequence:

>1632_bases
ATGAACTTGAAAAGAAAGATATTAAAAGGGAGAAAATCTTTTGTTTCTGCTATTATTGCAATGGGGATGTTTGTGCAACA
AGTTTCAGCAAAAACACCTGCAGATACTCTCGTGATGGCTTTGAATCTCGATTCAATCGAGACCTTTGATCCTGCACAGA
TCAACGAACGTTATGGAAATGAAGTTATTACCAATATTTGTGATAATTTAATCGATTCCGCTACAGACGATCCAGCTAAA
ATAGTTCCTTCTTTAGCAAAGAGTTGGGATGTTTCAAATGATGGACAAGGTACAGTAATTACTTTTCATTTGCGCGATGG
TTTGAAGTTTAATGATGGTCGGCCTGCTGATGCCCATGATCTTGTTTGGGGCATGAAGCGGGTTGTCAAATTAAAGTTGT
CTGCAGCGGCAATATTTAACGAATATGGAATTACAGAACAAAATATTGATTCTACTCTTCAAGCACCAGATGAGAAAACC
GTTGTGATGAAATTTGACAAGCTTTATCCAGCAGAGATCATTCTGGGTCATATTGTTACTGGTCGTGTTGCTGCCTTGCT
TGATCGTGAGACAATTATGAAACACGAACAAGATGGTGATATGGGGGATCGCTATTTGGCAAGTCACGCTGCTTGTGTTG
GTCCTTATCAATTAAGTAGTTGGCGTTCTGGGGAAGCGATTTTTTTGCGTGCAAGTTCCAATTATTGGGGAGCGGCACCC
AAATTGAAGAAGATTTTAATTCGCCATGTTGCAGAACCAGGAACGCAGCGTTTATTATTGCAAAAACACGATATTGATGT
TGCACGTAATTTGATGCCAGAAGATATTGCAGATCTCCAAGCAACAACAGATATTAAGATTGAAAAAAGATTGACACCCT
CCGTAATCATGTGGGGATTTAATACGACAAACCCAATTTTTGCTAATGAAAAAGTGCGTTTGGCAATGCGCTATCTTATT
GATTATGAAGGTCTTGGAAAAACCCTTCTGAAAGATGTTGGTATTCCACGTGCAAGCTTTATTCCCATTGGGAATCTTGG
GGCTTTGGATGAAAAAGAAGGGCAACCCTTTAAACTTGATCTTCAAAAAGCTAAACAGCTTTTAACAGAAGCAGGTTATC
CAAATGGTTTTGAGGCTAATATTTTTGCAGGGAAGTCTCCTTATCCTTTTGCTTTGCCTATGGCTCAGTCTATACAAGAC
AATGCAAAAAAGATAGGAGTGCACTTTAAAATTGAAAATTTTGTAGGAACGCAGTTGTTCTCAAAACTTTATGCACGTAG
CTTTGATACCATTTTTATGGGATGGAATAACGATTCTGCGGATCCTTATACAATGGCTTCACGCCTTATTTACAACCCTG
ATAATCGGTTTGAGGCTAAAAATACGGGCTATCCTAGTTGGTGCCATGGGTATTTTGATCAAAATATGAATCAAAAGGTT
GAAGATGCGTTGTTTGAAAAGGATTCACAAAAACGGGCACAAATCTATGCGGATTTGCAGCGTGAATTTATGCAAAAAGG
ACCCTATGCTTTTATTTATCAGACATATAATATTATCGCTATGACAACTGATGTCAAAAAGTGGGTTTGGAATAGTGCCC
CACGTATTTTTTATAGTGCCATTGAAAAATAA

Upstream 100 bases:

>100_bases
CTTTAATGTTTTGATATGTTATCTCTGAGAGGTATGTTTTCAAACCTGATCTACTGATTTATGGGGGAATTTATATAATA
AACTTTAAAAGGAAAAATCT

Downstream 100 bases:

>100_bases
GCACAGTGTAGGCAAGGTAAAATATAAAAAAGCGTGATTATGATATCTTCGGCGTTTCGCATAGGGTTAAAAACTTTGCA
ATACGTCGAAGGTTAACTGT

Product: ABC transporter, periplasmic oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MNLKRKILKGRKSFVSAIIAMGMFVQQVSAKTPADTLVMALNLDSIETFDPAQINERYGNEVITNICDNLIDSATDDPAK
IVPSLAKSWDVSNDGQGTVITFHLRDGLKFNDGRPADAHDLVWGMKRVVKLKLSAAAIFNEYGITEQNIDSTLQAPDEKT
VVMKFDKLYPAEIILGHIVTGRVAALLDRETIMKHEQDGDMGDRYLASHAACVGPYQLSSWRSGEAIFLRASSNYWGAAP
KLKKILIRHVAEPGTQRLLLQKHDIDVARNLMPEDIADLQATTDIKIEKRLTPSVIMWGFNTTNPIFANEKVRLAMRYLI
DYEGLGKTLLKDVGIPRASFIPIGNLGALDEKEGQPFKLDLQKAKQLLTEAGYPNGFEANIFAGKSPYPFALPMAQSIQD
NAKKIGVHFKIENFVGTQLFSKLYARSFDTIFMGWNNDSADPYTMASRLIYNPDNRFEAKNTGYPSWCHGYFDQNMNQKV
EDALFEKDSQKRAQIYADLQREFMQKGPYAFIYQTYNIIAMTTDVKKWVWNSAPRIFYSAIEK

Sequences:

>Translated_543_residues
MNLKRKILKGRKSFVSAIIAMGMFVQQVSAKTPADTLVMALNLDSIETFDPAQINERYGNEVITNICDNLIDSATDDPAK
IVPSLAKSWDVSNDGQGTVITFHLRDGLKFNDGRPADAHDLVWGMKRVVKLKLSAAAIFNEYGITEQNIDSTLQAPDEKT
VVMKFDKLYPAEIILGHIVTGRVAALLDRETIMKHEQDGDMGDRYLASHAACVGPYQLSSWRSGEAIFLRASSNYWGAAP
KLKKILIRHVAEPGTQRLLLQKHDIDVARNLMPEDIADLQATTDIKIEKRLTPSVIMWGFNTTNPIFANEKVRLAMRYLI
DYEGLGKTLLKDVGIPRASFIPIGNLGALDEKEGQPFKLDLQKAKQLLTEAGYPNGFEANIFAGKSPYPFALPMAQSIQD
NAKKIGVHFKIENFVGTQLFSKLYARSFDTIFMGWNNDSADPYTMASRLIYNPDNRFEAKNTGYPSWCHGYFDQNMNQKV
EDALFEKDSQKRAQIYADLQREFMQKGPYAFIYQTYNIIAMTTDVKKWVWNSAPRIFYSAIEK
>Mature_543_residues
MNLKRKILKGRKSFVSAIIAMGMFVQQVSAKTPADTLVMALNLDSIETFDPAQINERYGNEVITNICDNLIDSATDDPAK
IVPSLAKSWDVSNDGQGTVITFHLRDGLKFNDGRPADAHDLVWGMKRVVKLKLSAAAIFNEYGITEQNIDSTLQAPDEKT
VVMKFDKLYPAEIILGHIVTGRVAALLDRETIMKHEQDGDMGDRYLASHAACVGPYQLSSWRSGEAIFLRASSNYWGAAP
KLKKILIRHVAEPGTQRLLLQKHDIDVARNLMPEDIADLQATTDIKIEKRLTPSVIMWGFNTTNPIFANEKVRLAMRYLI
DYEGLGKTLLKDVGIPRASFIPIGNLGALDEKEGQPFKLDLQKAKQLLTEAGYPNGFEANIFAGKSPYPFALPMAQSIQD
NAKKIGVHFKIENFVGTQLFSKLYARSFDTIFMGWNNDSADPYTMASRLIYNPDNRFEAKNTGYPSWCHGYFDQNMNQKV
EDALFEKDSQKRAQIYADLQREFMQKGPYAFIYQTYNIIAMTTDVKKWVWNSAPRIFYSAIEK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=533, Percent_Identity=24.765478424015, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1789966, Length=527, Percent_Identity=24.4781783681214, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1787052, Length=509, Percent_Identity=23.5756385068762, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787495, Length=549, Percent_Identity=23.6794171220401, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787551, Length=502, Percent_Identity=23.3067729083665, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789397, Length=530, Percent_Identity=23.3962264150943, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61189; Mature: 61189

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKRKILKGRKSFVSAIIAMGMFVQQVSAKTPADTLVMALNLDSIETFDPAQINERYGN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
EVITNICDNLIDSATDDPAKIVPSLAKSWDVSNDGQGTVITFHLRDGLKFNDGRPADAHD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEECCCCCCCHHH
LVWGMKRVVKLKLSAAAIFNEYGITEQNIDSTLQAPDEKTVVMKFDKLYPAEIILGHIVT
HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
GRVAALLDRETIMKHEQDGDMGDRYLASHAACVGPYQLSSWRSGEAIFLRASSNYWGAAP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCH
KLKKILIRHVAEPGTQRLLLQKHDIDVARNLMPEDIADLQATTDIKIEKRLTPSVIMWGF
HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCHHHHHHHCCCCCEEEECCCCCEEEEECC
NTTNPIFANEKVRLAMRYLIDYEGLGKTLLKDVGIPRASFIPIGNLGALDEKEGQPFKLD
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEE
LQKAKQLLTEAGYPNGFEANIFAGKSPYPFALPMAQSIQDNAKKIGVHFKIENFVGTQLF
HHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHEEEEEEEHHHHHHHHH
SKLYARSFDTIFMGWNNDSADPYTMASRLIYNPDNRFEAKNTGYPSWCHGYFDQNMNQKV
HHHHHCCCCEEEEECCCCCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHCCCCCHHH
EDALFEKDSQKRAQIYADLQREFMQKGPYAFIYQTYNIIAMTTDVKKWVWNSAPRIFYSA
HHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECHHHHHHHCCCCHHHHHH
IEK
HCC
>Mature Secondary Structure
MNLKRKILKGRKSFVSAIIAMGMFVQQVSAKTPADTLVMALNLDSIETFDPAQINERYGN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
EVITNICDNLIDSATDDPAKIVPSLAKSWDVSNDGQGTVITFHLRDGLKFNDGRPADAHD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEECCCCCCCHHH
LVWGMKRVVKLKLSAAAIFNEYGITEQNIDSTLQAPDEKTVVMKFDKLYPAEIILGHIVT
HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
GRVAALLDRETIMKHEQDGDMGDRYLASHAACVGPYQLSSWRSGEAIFLRASSNYWGAAP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCH
KLKKILIRHVAEPGTQRLLLQKHDIDVARNLMPEDIADLQATTDIKIEKRLTPSVIMWGF
HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCHHHHHHHCCCCCEEEECCCCCEEEEECC
NTTNPIFANEKVRLAMRYLIDYEGLGKTLLKDVGIPRASFIPIGNLGALDEKEGQPFKLD
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEE
LQKAKQLLTEAGYPNGFEANIFAGKSPYPFALPMAQSIQDNAKKIGVHFKIENFVGTQLF
HHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHEEEEEEEHHHHHHHHH
SKLYARSFDTIFMGWNNDSADPYTMASRLIYNPDNRFEAKNTGYPSWCHGYFDQNMNQKV
HHHHHCCCCEEEEECCCCCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHCCCCCHHH
EDALFEKDSQKRAQIYADLQREFMQKGPYAFIYQTYNIIAMTTDVKKWVWNSAPRIFYSA
HHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECHHHHHHHCCCCHHHHHH
IEK
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]