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The map label for this gene is degT [H]

Identifier: 49475928

GI number: 49475928

Start: 1345715

End: 1346833

Strand: Reverse

Name: degT [H]

Synonym: BH12090

Alternate gene names: 49475928

Gene position: 1346833-1345715 (Counterclockwise)

Preceding gene: 49475929

Following gene: 49475925

Centisome position: 69.75

GC content: 40.21

Gene sequence:

>1119_bases
ATGCAATTTATCGACCTTGGGGCGCAGCGTGCGCGCATTGAAGATAAAGTGAATGCTGCAATTGCGCATGTGGTTGCCAG
TGGTCAATACATTTTGGGGCCAAAAGTAACAGAATTTGAAGAGCAATTGGCAGATTATCTTGGCGTTAAACATGTAATTG
CCTGTGCCAATGGAACGGATGCCTTGAAGATGCCTCTTATGGCTAAAAATATTGGGCCAGGTGATGCTGTTTTTTGTCCT
AGCTTCACGTTTTCGGCAACTGCGGAAGTGGTTGCTTTGGTGGGAGCAGAACCTGTTTTTGTTGATGTTGTGTCTGATAC
ATTTAATATCGACGTTGATAAACTTTGTGAAGCAATTGAGATGATTAAAAAAGAGGGACGTCTCAAACCAAAAGCAATTA
TTGCTGTGGATTTGTTCGGGCTTCCTGCCGATTATGCGCAAATTGCTCAAGTGGCTGCAAAGGAAAATCTTTTTGTGATT
GAAGATGCTGCTCAATCAATGGGGGGAAGAAGCGGTAGTATTATGTGCGGAGCTTTTGGTGATGTGGCTGCGACAAGTTT
TTATCCTGCAAAACCATTAGGGTGTTATGGCGATGGAGGCGCTATGATGACCAGTGATGATGATTTAGCAGCGCTTTTAC
GTTCTATCCTGTTTCATGGAAAAGGTGAAACGCAATATGACAATGTGCGTATCGGTTTGAATTCACGCTTGGATACAATT
CAAGCTGCAATCTTGCTAGAAAAGTTCGTTATATTTGAAGAGGAGATGGAAAAGCGTGTTGCGATTGCGCAATATTATGC
CAATAATTTAAGAGATATTGTTACAGTTCCAGAAGTGGCAGAAGATGCTCGTTGTGCCTATGCACAATACACTCTTAAAG
TGAAAAACCGCGATAGATTACAAGACTATTTACAGAAAAATTCTATTCCTACAATGGTTTATTATAAAACTCCTTTGCAT
CAACAGCCAGCTTATAAACACTTTCCTTATGTCAACGGTTCTCTTTCTGTTTCTGAATCTCTGAGAGATTGTGTTCTCAG
TTTACCAATGCATCCTTATTTGACAAAAAATGATCAGGATATGATTATCCAGAAAATAAGAGATTTTTACCATTCTTGA

Upstream 100 bases:

>100_bases
CTTGCTATTTTACGGATTTTAACTGCTGCTGGTGTCAATTATCAGAAATAAAAGAGATTAGTAGCACTTTTATATTTTTG
TCATTATCAATGGAGTTAAT

Downstream 100 bases:

>100_bases
AAGAATGCTTTTACTTTTCAAGCTATTTAAGAGCAGGCTTTGATTGGGGGGATATCTTTGAAGGTGTTTTAGAAAAGTAG
TAACTTAAAAAACAAAGTTA

Product: degt /dnrj /eryc1 /strs family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MQFIDLGAQRARIEDKVNAAIAHVVASGQYILGPKVTEFEEQLADYLGVKHVIACANGTDALKMPLMAKNIGPGDAVFCP
SFTFSATAEVVALVGAEPVFVDVVSDTFNIDVDKLCEAIEMIKKEGRLKPKAIIAVDLFGLPADYAQIAQVAAKENLFVI
EDAAQSMGGRSGSIMCGAFGDVAATSFYPAKPLGCYGDGGAMMTSDDDLAALLRSILFHGKGETQYDNVRIGLNSRLDTI
QAAILLEKFVIFEEEMEKRVAIAQYYANNLRDIVTVPEVAEDARCAYAQYTLKVKNRDRLQDYLQKNSIPTMVYYKTPLH
QQPAYKHFPYVNGSLSVSESLRDCVLSLPMHPYLTKNDQDMIIQKIRDFYHS

Sequences:

>Translated_372_residues
MQFIDLGAQRARIEDKVNAAIAHVVASGQYILGPKVTEFEEQLADYLGVKHVIACANGTDALKMPLMAKNIGPGDAVFCP
SFTFSATAEVVALVGAEPVFVDVVSDTFNIDVDKLCEAIEMIKKEGRLKPKAIIAVDLFGLPADYAQIAQVAAKENLFVI
EDAAQSMGGRSGSIMCGAFGDVAATSFYPAKPLGCYGDGGAMMTSDDDLAALLRSILFHGKGETQYDNVRIGLNSRLDTI
QAAILLEKFVIFEEEMEKRVAIAQYYANNLRDIVTVPEVAEDARCAYAQYTLKVKNRDRLQDYLQKNSIPTMVYYKTPLH
QQPAYKHFPYVNGSLSVSESLRDCVLSLPMHPYLTKNDQDMIIQKIRDFYHS
>Mature_372_residues
MQFIDLGAQRARIEDKVNAAIAHVVASGQYILGPKVTEFEEQLADYLGVKHVIACANGTDALKMPLMAKNIGPGDAVFCP
SFTFSATAEVVALVGAEPVFVDVVSDTFNIDVDKLCEAIEMIKKEGRLKPKAIIAVDLFGLPADYAQIAQVAAKENLFVI
EDAAQSMGGRSGSIMCGAFGDVAATSFYPAKPLGCYGDGGAMMTSDDDLAALLRSILFHGKGETQYDNVRIGLNSRLDTI
QAAILLEKFVIFEEEMEKRVAIAQYYANNLRDIVTVPEVAEDARCAYAQYTLKVKNRDRLQDYLQKNSIPTMVYYKTPLH
QQPAYKHFPYVNGSLSVSESLRDCVLSLPMHPYLTKNDQDMIIQKIRDFYHS

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=370, Percent_Identity=30.5405405405405, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI2367285, Length=348, Percent_Identity=27.8735632183908, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40977; Mature: 40977

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFIDLGAQRARIEDKVNAAIAHVVASGQYILGPKVTEFEEQLADYLGVKHVIACANGTD
CCCHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCHHHEEEECCCCC
ALKMPLMAKNIGPGDAVFCPSFTFSATAEVVALVGAEPVFVDVVSDTFNIDVDKLCEAIE
HHCCCHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
MIKKEGRLKPKAIIAVDLFGLPADYAQIAQVAAKENLFVIEDAAQSMGGRSGSIMCGAFG
HHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCEEEEEHHHHHCCCCCCCEEEECCC
DVAATSFYPAKPLGCYGDGGAMMTSDDDLAALLRSILFHGKGETQYDNVRIGLNSRLDTI
CHHHCCCCCCCCCCEECCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
QAAILLEKFVIFEEEMEKRVAIAQYYANNLRDIVTVPEVAEDARCAYAQYTLKVKNRDRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHEEEEEEEEECCHHHH
QDYLQKNSIPTMVYYKTPLHQQPAYKHFPYVNGSLSVSESLRDCVLSLPMHPYLTKNDQD
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH
MIIQKIRDFYHS
HHHHHHHHHHCC
>Mature Secondary Structure
MQFIDLGAQRARIEDKVNAAIAHVVASGQYILGPKVTEFEEQLADYLGVKHVIACANGTD
CCCHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCHHHEEEECCCCC
ALKMPLMAKNIGPGDAVFCPSFTFSATAEVVALVGAEPVFVDVVSDTFNIDVDKLCEAIE
HHCCCHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
MIKKEGRLKPKAIIAVDLFGLPADYAQIAQVAAKENLFVIEDAAQSMGGRSGSIMCGAFG
HHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCEEEEEHHHHHCCCCCCCEEEECCC
DVAATSFYPAKPLGCYGDGGAMMTSDDDLAALLRSILFHGKGETQYDNVRIGLNSRLDTI
CHHHCCCCCCCCCCEECCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
QAAILLEKFVIFEEEMEKRVAIAQYYANNLRDIVTVPEVAEDARCAYAQYTLKVKNRDRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHEEEEEEEEECCHHHH
QDYLQKNSIPTMVYYKTPLHQQPAYKHFPYVNGSLSVSESLRDCVLSLPMHPYLTKNDQD
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH
MIIQKIRDFYHS
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]