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The map label for this gene is rpmD

Identifier: 49475776

GI number: 49475776

Start: 1147566

End: 1147772

Strand: Reverse

Name: rpmD

Synonym: BH10330

Alternate gene names: 49475776

Gene position: 1147772-1147566 (Counterclockwise)

Preceding gene: 49475777

Following gene: 49475775

Centisome position: 59.44

GC content: 41.06

Gene sequence:

>207_bases
ATGGTTCAGAAAAAATCTCAGAGTAGTAAAACTGTGACGGTCGAACAAATTGGAAGTCCGATTCGGAATTCGCAGATTCA
GCGTGCGACTTTGAAAGGACTTGGATTAAATAAAATGCATCGGCGACGTGTTTTAGAGGATACACTTTGCGTACGGGGGA
TGATCGCTAAAGTTCAGCATCTTGTTCGTGTTATAGATGAAAGTTAA

Upstream 100 bases:

>100_bases
GCTCAACGTGGTATCAAATATTCGACTTTGCAGGCACGTCGTCAGCATTTAGTTGATGCGGAAGGATAATTTCTGAGATT
ATCAGAAAAGGAATTAAGAA

Downstream 100 bases:

>100_bases
AGGTCGCAGGAGTACAAAAGATGAAACTCAATGAACTGAGTGATTGCAAAGGTGCAATAAGGAATCGTAAGCGTGTTGGG
CGTGGTATTGGTTCGGGTAC

Product: 50S ribosomal protein L30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MVQKKSQSSKTVTVEQIGSPIRNSQIQRATLKGLGLNKMHRRRVLEDTLCVRGMIAKVQHLVRVIDES

Sequences:

>Translated_68_residues
MVQKKSQSSKTVTVEQIGSPIRNSQIQRATLKGLGLNKMHRRRVLEDTLCVRGMIAKVQHLVRVIDES
>Mature_68_residues
MVQKKSQSSKTVTVEQIGSPIRNSQIQRATLKGLGLNKMHRRRVLEDTLCVRGMIAKVQHLVRVIDES

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30_BARHE (Q6G2Y3)

Other databases:

- EMBL:   BX897699
- RefSeq:   YP_033817.1
- ProteinModelPortal:   Q6G2Y3
- SMR:   Q6G2Y3
- GeneID:   2866025
- GenomeReviews:   BX897699_GR
- KEGG:   bhe:BH10330
- NMPDR:   fig|283166.1.peg.945
- HOGENOM:   HBG690556
- OMA:   SVRGMIA
- ProtClustDB:   PRK05611
- BioCyc:   BHEN283166:BH10330-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01371_B
- InterPro:   IPR005996
- InterPro:   IPR016082
- Gene3D:   G3DSA:3.30.1390.20
- PIRSF:   PIRSF002211
- TIGRFAMs:   TIGR01308

Pfam domain/function: PF00327 Ribosomal_L30; SSF55129 Ribosomal_L30

EC number: NA

Molecular weight: Translated: 7698; Mature: 7698

Theoretical pI: Translated: 11.61; Mature: 11.61

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKKSQSSKTVTVEQIGSPIRNSQIQRATLKGLGLNKMHRRRVLEDTLCVRGMIAKVQH
CCCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LVRVIDES
HHHHHCCC
>Mature Secondary Structure
MVQKKSQSSKTVTVEQIGSPIRNSQIQRATLKGLGLNKMHRRRVLEDTLCVRGMIAKVQH
CCCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LVRVIDES
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA