Click here to switch to the map view.

The map label for this gene is ccdA [H]

Identifier: 49475739

GI number: 49475739

Start: 1097177

End: 1097965

Strand: Reverse

Name: ccdA [H]

Synonym: BH09940

Alternate gene names: 49475739

Gene position: 1097965-1097177 (Counterclockwise)

Preceding gene: 49475740

Following gene: 49475738

Centisome position: 56.86

GC content: 36.38

Gene sequence:

>789_bases
TTGATTGTAGAAATTTCGACAGTTGGTGTATTTTTTGCTGGTGCACTCTCTTTTTTATCACCGTGTGTTTTGCCGTTAGT
TCCTCCTTATTTGTGCTATATGGCGGGCATTGGTATTGATGATTTTCGTTCAGAAAAACATAAGGGAAGAGTGTTTATAC
GGTGGGCGCTTTTATCTTCTGTTATTGCCTTTGTGATGGGTTTTACAACCGTTTTTGTCGCTTTAGGTGCCAGTGCAAGC
ACAATTGGAAAGCTTATCGCTTATTATCGTGATTGGTTTGCACTTTCTGCTGGAATTATCATTATTATTTTTGGTTTAAA
CTTTTTGGGTCTTTTCAAAATTGCTTTTTTATTTCGTGAAGCGCGTTTTCAAATACATAAAAGGCCTTCTGGTCCTTTAG
GTGCTTACGTTATTGGTTTAGCTTTTGCATTTGGTTGGACACCTTGTATTGGCCCAATTTTAGGACCCGTTATAACACTT
GCTGGAACAAAAGAAACTGTGGGTGAGGGAGCTGTTCTTTTAGGGGTTTATGCCTTAGGACTTGGTGTGCCTTTTCTGAT
AGCAGCTTTATTTTCGAGTAGTTTTATGAGATTTTTAGGAGCTTTTCGTATTCATTTAGGAAAAGTTGAAAAAATTATTG
GTATTTTTTTGGTTGTGACGGGTATTTTATTTTTAACAGGCTCTATGCAGGATTTTTCATTTTGGCTTTTGGAACATTAC
CCTTTGTTGAATCAAATTGAAACTATCCATTGGCATGATATTGTGAATTTTTTAGGTTTTTCTCGTTAG

Upstream 100 bases:

>100_bases
AATGTGGTAGCGAAAGCACAAAATATGCAACAAATTGATGAAGAAATCGATTGATGGTTGTGCATGTGCATAAACTGTTA
TAGAAAACGGATAGAGAGTT

Downstream 100 bases:

>100_bases
TTTGATGAGTTTTATGATGAGAAGTTGTCTTTCTATTGTTCTTGCAGCAGGTGAGGGGACGCGCATGAAGTCGTCGCTTC
CTAAAGTGCTTCATAAAATT

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIVEISTVGVFFAGALSFLSPCVLPLVPPYLCYMAGIGIDDFRSEKHKGRVFIRWALLSSVIAFVMGFTTVFVALGASAS
TIGKLIAYYRDWFALSAGIIIIIFGLNFLGLFKIAFLFREARFQIHKRPSGPLGAYVIGLAFAFGWTPCIGPILGPVITL
AGTKETVGEGAVLLGVYALGLGVPFLIAALFSSSFMRFLGAFRIHLGKVEKIIGIFLVVTGILFLTGSMQDFSFWLLEHY
PLLNQIETIHWHDIVNFLGFSR

Sequences:

>Translated_262_residues
MIVEISTVGVFFAGALSFLSPCVLPLVPPYLCYMAGIGIDDFRSEKHKGRVFIRWALLSSVIAFVMGFTTVFVALGASAS
TIGKLIAYYRDWFALSAGIIIIIFGLNFLGLFKIAFLFREARFQIHKRPSGPLGAYVIGLAFAFGWTPCIGPILGPVITL
AGTKETVGEGAVLLGVYALGLGVPFLIAALFSSSFMRFLGAFRIHLGKVEKIIGIFLVVTGILFLTGSMQDFSFWLLEHY
PLLNQIETIHWHDIVNFLGFSR
>Mature_262_residues
MIVEISTVGVFFAGALSFLSPCVLPLVPPYLCYMAGIGIDDFRSEKHKGRVFIRWALLSSVIAFVMGFTTVFVALGASAS
TIGKLIAYYRDWFALSAGIIIIIFGLNFLGLFKIAFLFREARFQIHKRPSGPLGAYVIGLAFAFGWTPCIGPILGPVITL
AGTKETVGEGAVLLGVYALGLGVPFLIAALFSSSFMRFLGAFRIHLGKVEKIIGIFLVVTGILFLTGSMQDFSFWLLEHY
PLLNQIETIHWHDIVNFLGFSR

Specific function: Required for cytochrome c synthesis and stage V of sporulation. Might transfer reducing equivalents across the cytoplasmic membrane, promoting efficient disulfide bond isomerization of proteins localized on the outer surface of the membrane or in the spor

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 28714; Mature: 28714

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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CHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]