| Definition | Bartonella henselae str. Houston-1, complete genome. |
|---|---|
| Accession | NC_005956 |
| Length | 1,931,047 |
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The map label for this gene is lptD [H]
Identifier: 49475337
GI number: 49475337
Start: 629628
End: 631997
Strand: Reverse
Name: lptD [H]
Synonym: BH05430
Alternate gene names: 49475337
Gene position: 631997-629628 (Counterclockwise)
Preceding gene: 49475338
Following gene: 49475336
Centisome position: 32.73
GC content: 37.93
Gene sequence:
>2370_bases GTGAAAGCATTAATAAGTAAGAGAGTGATTTTGATAAAATTACATACACTTGCCTTTAAAAGTATTATAGGTTGTGTCCT AGGTATATTTTTATCCTGTTCTACAAGCGCCAAAAATCCTACTTTTCTTGTTCAAAATCACAGCCCAAAACCAGTAAGTC CTCTTTTGCTCTCTGCAGATGAACTCATCTACAATCGTGATGAAAATACTGTTTCTGCACAAGGCAATGTGCAAATCGAA TATAATGGCAATAAAGTTGTTGCCCAAAAAGTCACTTATAATCAAAAGACAGGACGTATTATCGCACAAGGAAATGTTGA AATTGTTCAAAAAGACGGTAATAAAATTTATTCAAATCAGATTGATATGACCAAAGATTTTGGCGAAGGCTTCGTAAATG CTTTACGCATCGACACAGCCACCAATATCCATTTTGCGGCAACAAGTGCTACACGCCGTAATAACCAGATAACAATCTTT GATAATGCCACCTATACAGCCTGTGAACCTTGCTCTTATAAACCAGAGAGAGACGTCCTTTGGAAAATTAAAGCAAGAAA GATCATATGGAATAGCGTTACCAAAAAAATTCAATTTGAAAATAGCCGTTTTGAAGTTTTTGGTGTACCGATTGCACAGC TTCCAACTTTTGAGCTCTATGACCCAACAATACGGCGTGCTAGCGGTTTTCTCGCGCCCCATTTTTTTTATGCCGATTAT TTGGGTATGGGCATAAAAAATTCTTATTTCTGGAATCTTGCTCCCCATTATGATTTAACACTTTCCTCTACACTCTATAG CCAACAAGGTCTTCTAACCGAGGGTGAATGGCGTCAACGTTTTCAAACGGGCAATTACAACATTCGCTTCGCTCATATAT ACCAATTGAGACCACAAAACTTTGACAATGATACGATTGATGCACAGCATAAAAACCGTTATATGCTCGCAACAAAGGGT GATTTTCGTCTTAATTCACGCTGGACTTATGGATGGGATATTCTCGCTCAATCTGATCGACATTTTAGTCGTGCTTATAA ACTTGAAAATTATAGGGATCCTACACAGCTCTCTCAGCTTTATCTAAATGGTCTTGCAGGTAAAAACCACTTTGACATGC GTTTTTACCATTTCAAGGTTCAAGATTTGATCTTAAATGATCCTGGTCATGAACGCCACTCTCGACAAGCGTGGGTTCTC CCTCAAATCGATTATTCTTTCACACCAGATGAATCAATTTATATTGGATTGCTTACTTTTCACAGTAATATGCAATCAGT TTATCGTCATCATACTAACTTTAGCTCTAGCAACTGGAATGGACATCCGCTTAACACTGTGAGGCTTTCTGGTATCGCAG GAAATAGTTTTCGTTTAACAAACGAGCTAGAGTGGAAAAAGCGCTTTACCATGCACGGTGGACTCATATTAACTCCTCTT CTCTCTTTACGTGCTGATATCATGACAACAAATACGCACGACAACAAGAATGCTCATATAACAAATGACCCCTTATCAAC AGTCCGTGGCTCAGCACTGCGCGGTATGGCAACTGCTGGTTTAGAATTACGCTATCCATTCCTCATTACATTTGATAGCT CTACACATATTATAGAACCAACTGCACAAATTTTTATACGCAATAATGAACAATATATTGGACAAATCCCCAATGAAGAT GCGCAAAGCTTTGTATTTGACGCAACCACTCTCTTTCAACGTGATAAGTTCTCTGGTTATGACCGCGTAGAAGGTGGAAC AAGAGCTAATATAGGACTAAGGTATTCTGGAAACTTTAACAATGATTGGTCTCTTTATGGTGTTATTGGACAATCTTTTC ATCTTGCAGGAAAAAATTCTTTTGCAGAAAAGGACTTTGTTAATGTAGGCATTCATTCTAGCCTTGAAGCAACACGGTCA GACTATGTTGCAATGTTTGGTGCAAATCATAAGAGTGGTTTTTTCTTGGAAGCTCGCGGACGTTTTGATAAAAAAACGGG AGAAATTCACCGTAGTGAAATTGAAGCGTCACAGAAATGGCAAAATTTTGAGGCTGCTGTACAATATGCCTATATTGCAA GCCAGCCAGACTATGAATATCCACAAGAGCGTCAAGAAATTTCTTTTCAAACTGGTATTAAACTGACTAACTCTTGGTCC ATTAGCAGCAATGCCAGTTACGATTTAATATCCGATACATTCGTAAAGAGAGGAATCAGCTTACGTTATGCAGATGAATG TTTCGGGCTAACATTTGGTTATCAGCAAGTCATTAATCTAGGAAAAAAAACACCTTTGCAAAACTTCAATTTCTCTCTTT CATTGCGTACAATTGCAGATATCGGAAAAAAAACAAAATCAGATTTATAA
Upstream 100 bases:
>100_bases TAATGCCGGATATATTCCACCAATTATTGCAGCTTGGACACCAGTTTTTATTGCATTATTTTTAGGAATCTCTTTTTTAC TCCATAAAGAGGATGGCTAA
Downstream 100 bases:
>100_bases GGAGAATTATAGGTGATATAACTTACCATTGTTTTTATAAAAAAAAACGTATATTTTAAGTCATCGGTGAGAATTGATAA ACAATGCGAAAGCCTAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MKALISKRVILIKLHTLAFKSIIGCVLGIFLSCSTSAKNPTFLVQNHSPKPVSPLLLSADELIYNRDENTVSAQGNVQIE YNGNKVVAQKVTYNQKTGRIIAQGNVEIVQKDGNKIYSNQIDMTKDFGEGFVNALRIDTATNIHFAATSATRRNNQITIF DNATYTACEPCSYKPERDVLWKIKARKIIWNSVTKKIQFENSRFEVFGVPIAQLPTFELYDPTIRRASGFLAPHFFYADY LGMGIKNSYFWNLAPHYDLTLSSTLYSQQGLLTEGEWRQRFQTGNYNIRFAHIYQLRPQNFDNDTIDAQHKNRYMLATKG DFRLNSRWTYGWDILAQSDRHFSRAYKLENYRDPTQLSQLYLNGLAGKNHFDMRFYHFKVQDLILNDPGHERHSRQAWVL PQIDYSFTPDESIYIGLLTFHSNMQSVYRHHTNFSSSNWNGHPLNTVRLSGIAGNSFRLTNELEWKKRFTMHGGLILTPL LSLRADIMTTNTHDNKNAHITNDPLSTVRGSALRGMATAGLELRYPFLITFDSSTHIIEPTAQIFIRNNEQYIGQIPNED AQSFVFDATTLFQRDKFSGYDRVEGGTRANIGLRYSGNFNNDWSLYGVIGQSFHLAGKNSFAEKDFVNVGIHSSLEATRS DYVAMFGANHKSGFFLEARGRFDKKTGEIHRSEIEASQKWQNFEAAVQYAYIASQPDYEYPQERQEISFQTGIKLTNSWS ISSNASYDLISDTFVKRGISLRYADECFGLTFGYQQVINLGKKTPLQNFNFSLSLRTIADIGKKTKSDL
Sequences:
>Translated_789_residues MKALISKRVILIKLHTLAFKSIIGCVLGIFLSCSTSAKNPTFLVQNHSPKPVSPLLLSADELIYNRDENTVSAQGNVQIE YNGNKVVAQKVTYNQKTGRIIAQGNVEIVQKDGNKIYSNQIDMTKDFGEGFVNALRIDTATNIHFAATSATRRNNQITIF DNATYTACEPCSYKPERDVLWKIKARKIIWNSVTKKIQFENSRFEVFGVPIAQLPTFELYDPTIRRASGFLAPHFFYADY LGMGIKNSYFWNLAPHYDLTLSSTLYSQQGLLTEGEWRQRFQTGNYNIRFAHIYQLRPQNFDNDTIDAQHKNRYMLATKG DFRLNSRWTYGWDILAQSDRHFSRAYKLENYRDPTQLSQLYLNGLAGKNHFDMRFYHFKVQDLILNDPGHERHSRQAWVL PQIDYSFTPDESIYIGLLTFHSNMQSVYRHHTNFSSSNWNGHPLNTVRLSGIAGNSFRLTNELEWKKRFTMHGGLILTPL LSLRADIMTTNTHDNKNAHITNDPLSTVRGSALRGMATAGLELRYPFLITFDSSTHIIEPTAQIFIRNNEQYIGQIPNED AQSFVFDATTLFQRDKFSGYDRVEGGTRANIGLRYSGNFNNDWSLYGVIGQSFHLAGKNSFAEKDFVNVGIHSSLEATRS DYVAMFGANHKSGFFLEARGRFDKKTGEIHRSEIEASQKWQNFEAAVQYAYIASQPDYEYPQERQEISFQTGIKLTNSWS ISSNASYDLISDTFVKRGISLRYADECFGLTFGYQQVINLGKKTPLQNFNFSLSLRTIADIGKKTKSDL >Mature_789_residues MKALISKRVILIKLHTLAFKSIIGCVLGIFLSCSTSAKNPTFLVQNHSPKPVSPLLLSADELIYNRDENTVSAQGNVQIE YNGNKVVAQKVTYNQKTGRIIAQGNVEIVQKDGNKIYSNQIDMTKDFGEGFVNALRIDTATNIHFAATSATRRNNQITIF DNATYTACEPCSYKPERDVLWKIKARKIIWNSVTKKIQFENSRFEVFGVPIAQLPTFELYDPTIRRASGFLAPHFFYADY LGMGIKNSYFWNLAPHYDLTLSSTLYSQQGLLTEGEWRQRFQTGNYNIRFAHIYQLRPQNFDNDTIDAQHKNRYMLATKG DFRLNSRWTYGWDILAQSDRHFSRAYKLENYRDPTQLSQLYLNGLAGKNHFDMRFYHFKVQDLILNDPGHERHSRQAWVL PQIDYSFTPDESIYIGLLTFHSNMQSVYRHHTNFSSSNWNGHPLNTVRLSGIAGNSFRLTNELEWKKRFTMHGGLILTPL LSLRADIMTTNTHDNKNAHITNDPLSTVRGSALRGMATAGLELRYPFLITFDSSTHIIEPTAQIFIRNNEQYIGQIPNED AQSFVFDATTLFQRDKFSGYDRVEGGTRANIGLRYSGNFNNDWSLYGVIGQSFHLAGKNSFAEKDFVNVGIHSSLEATRS DYVAMFGANHKSGFFLEARGRFDKKTGEIHRSEIEASQKWQNFEAAVQYAYIASQPDYEYPQERQEISFQTGIKLTNSWS ISSNASYDLISDTFVKRGISLRYADECFGLTFGYQQVINLGKKTPLQNFNFSLSLRTIADIGKKTKSDL
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=238, Percent_Identity=26.890756302521, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 90181; Mature: 90181
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALISKRVILIKLHTLAFKSIIGCVLGIFLSCSTSAKNPTFLVQNHSPKPVSPLLLSAD CCCHHHCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHCCCC ELIYNRDENTVSAQGNVQIEYNGNKVVAQKVTYNQKTGRIIAQGNVEIVQKDGNKIYSNQ HHEEECCCCEEECCCEEEEEECCCEEEEEEEEECCCCCEEEEECCEEEEEECCCEEECCC IDMTKDFGEGFVNALRIDTATNIHFAATSATRRNNQITIFDNATYTACEPCSYKPERDVL CCCCHHHHHHHHEEEEEECCCCEEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCEE WKIKARKIIWNSVTKKIQFENSRFEVFGVPIAQLPTFELYDPTIRRASGFLAPHFFYADY EEEEHHHHHHHHHHHEEEECCCEEEEEECCHHHCCCEECCCCHHHHHCCCCCHHHHHHHH LGMGIKNSYFWNLAPHYDLTLSSTLYSQQGLLTEGEWRQRFQTGNYNIRFAHIYQLRPQN HCCCCCCCEEEECCCCCCEEEHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEEEEEECCCC FDNDTIDAQHKNRYMLATKGDFRLNSRWTYGWDILAQSDRHFSRAYKLENYRDPTQLSQL CCCCCCCCCCCCEEEEEECCCEEECCEEEECEEEEECCCCHHHHHHHCCCCCCHHHHHHH YLNGLAGKNHFDMRFYHFKVQDLILNDPGHERHSRQAWVLPQIDYSFTPDESIYIGLLTF HHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEE HSNMQSVYRHHTNFSSSNWNGHPLNTVRLSGIAGNSFRLTNELEWKKRFTMHGGLILTPL HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHEEEECCCCHHHHH LSLRADIMTTNTHDNKNAHITNDPLSTVRGSALRGMATAGLELRYPFLITFDSSTHIIEP HHHHHEEEEECCCCCCCCEECCCCHHHHCCHHHCCHHHCCEEEECEEEEEECCCCEEECC TAQIFIRNNEQYIGQIPNEDAQSFVFDATTLFQRDKFSGYDRVEGGTRANIGLRYSGNFN CEEEEEECCCCEECCCCCCCHHHEEEEHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCC NDWSLYGVIGQSFHLAGKNSFAEKDFVNVGIHSSLEATRSDYVAMFGANHKSGFFLEARG CCEEEEEEECCEEEECCCCCCCCCCCEEECCCCCHHHHCCCEEEEEECCCCCCEEEEECC RFDKKTGEIHRSEIEASQKWQNFEAAVQYAYIASQPDYEYPQERQEISFQTGIKLTNSWS CCCCCCCCHHHHHHHHHHHHHCHHHHEEEEEEECCCCCCCCHHHHHCCHHHCEEEEEEEC ISSNASYDLISDTFVKRGISLRYADECFGLTFGYQQVINLGKKTPLQNFNFSLSLRTIAD CCCCCCCCHHHHHHHHCCCCEEECHHHHCEECCHHHHHHCCCCCCCCCCCEEEEEHHHHH IGKKTKSDL HHHHHCCCC >Mature Secondary Structure MKALISKRVILIKLHTLAFKSIIGCVLGIFLSCSTSAKNPTFLVQNHSPKPVSPLLLSAD CCCHHHCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHCCCC ELIYNRDENTVSAQGNVQIEYNGNKVVAQKVTYNQKTGRIIAQGNVEIVQKDGNKIYSNQ HHEEECCCCEEECCCEEEEEECCCEEEEEEEEECCCCCEEEEECCEEEEEECCCEEECCC IDMTKDFGEGFVNALRIDTATNIHFAATSATRRNNQITIFDNATYTACEPCSYKPERDVL CCCCHHHHHHHHEEEEEECCCCEEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCEE WKIKARKIIWNSVTKKIQFENSRFEVFGVPIAQLPTFELYDPTIRRASGFLAPHFFYADY EEEEHHHHHHHHHHHEEEECCCEEEEEECCHHHCCCEECCCCHHHHHCCCCCHHHHHHHH LGMGIKNSYFWNLAPHYDLTLSSTLYSQQGLLTEGEWRQRFQTGNYNIRFAHIYQLRPQN HCCCCCCCEEEECCCCCCEEEHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEEEEEECCCC FDNDTIDAQHKNRYMLATKGDFRLNSRWTYGWDILAQSDRHFSRAYKLENYRDPTQLSQL CCCCCCCCCCCCEEEEEECCCEEECCEEEECEEEEECCCCHHHHHHHCCCCCCHHHHHHH YLNGLAGKNHFDMRFYHFKVQDLILNDPGHERHSRQAWVLPQIDYSFTPDESIYIGLLTF HHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEE HSNMQSVYRHHTNFSSSNWNGHPLNTVRLSGIAGNSFRLTNELEWKKRFTMHGGLILTPL HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHEEEECCCCHHHHH LSLRADIMTTNTHDNKNAHITNDPLSTVRGSALRGMATAGLELRYPFLITFDSSTHIIEP HHHHHEEEEECCCCCCCCEECCCCHHHHCCHHHCCHHHCCEEEECEEEEEECCCCEEECC TAQIFIRNNEQYIGQIPNEDAQSFVFDATTLFQRDKFSGYDRVEGGTRANIGLRYSGNFN CEEEEEECCCCEECCCCCCCHHHEEEEHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCC NDWSLYGVIGQSFHLAGKNSFAEKDFVNVGIHSSLEATRSDYVAMFGANHKSGFFLEARG CCEEEEEEECCEEEECCCCCCCCCCCEEECCCCCHHHHCCCEEEEEECCCCCCEEEEECC RFDKKTGEIHRSEIEASQKWQNFEAAVQYAYIASQPDYEYPQERQEISFQTGIKLTNSWS CCCCCCCCHHHHHHHHHHHHHCHHHHEEEEEEECCCCCCCCHHHHHCCHHHCEEEEEEEC ISSNASYDLISDTFVKRGISLRYADECFGLTFGYQQVINLGKKTPLQNFNFSLSLRTIAD CCCCCCCCHHHHHHHHCCCCEEECHHHHCEECCHHHHHHCCCCCCCCCCCEEEEEHHHHH IGKKTKSDL HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA