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The map label for this gene is ygfZ [C]

Identifier: 49475310

GI number: 49475310

Start: 600379

End: 601236

Strand: Reverse

Name: ygfZ [C]

Synonym: BH05150

Alternate gene names: 49475310

Gene position: 601236-600379 (Counterclockwise)

Preceding gene: 49475312

Following gene: 49475309

Centisome position: 31.14

GC content: 35.9

Gene sequence:

>858_bases
ATGATTGAGAAGCCAAATGCCATTTGCTTAAAAAACCGTAAGATTATTAAAGTTACGGGTGAAGAAGCAACACATTTTCT
GCAAGCCCTTATCACAACAGATGTCAAAAAAATCGGTCTACAAGAAATTTTCCCTGGAGCCCTTTTATCTCCACAAGGAA
AGGTTCTTGCTGATTTTCTCATCGGCAAAAGAGAGGATGGTTATTTTATTGATATTTTTTCATCTTTATCTGATCTCCTC
TACAAGCGCCTACTCCTCTATAAAATGCGTACAAAAGTTGAAATTATGCAACCTTTACAAGAATTTGTTACAGTTTCTTG
GGAAAATGAAACAGATAGTTTAAATTTTTATTCAAGTTTTATTGATAAACGGTTTCCAGCAAAAGAAAAAATAATACGAA
TCTATGGTGAAACACCCTTTTTGGCTTCAGAATGTCATGACAATTGGAATCGATTACGTATCCGTTATGCAATTCCAGAA
AGCGATAAAGACTATGAAATCGGTAAAGTCTTTCCCCATGATATTAATTATGATCAAATCAATGGATTAGCATTCAACAA
AGGGTGCTATATCGGACAAGAAGTTGTCTCACGAATGCATCACCGTCGTGCAGCACGACGCCGTATTTTACTTGTAAAAA
GTCAACATGAATTAATCCCCGGTGCCAACATTGTAGCAGGAACAAAAATTCTTGGTTCTTTAGGAACATGTGCTGCAAAT
GAAGCCCTCGCTTTAATGCGTATTGACCACATCAAAGATGCAATGGATCATAATACTCCCTTTACAGTAAAAGATGTTCC
TGTCACTATAAGTATTGCTGAAAATATGAATTTTACTTTCCCTGAAAGCACTGTGTAA

Upstream 100 bases:

>100_bases
GCGCCTTTAAAAATTGTATCAAATGTTTTAAACATAACCGTACTCCTTCAATATCACCTCATTTATCGATTATGTAACTT
TGAGCAGAAAGGCAATAACC

Downstream 100 bases:

>100_bases
ACTCACTAATGGCTAAAGCTCAATTATCACAAAATGGAGAAGCGCGCGCTTGGCAAAGAATGCTTTCTGGCCGGCGACTT
GATCTTCTAAACCCCTCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MIEKPNAICLKNRKIIKVTGEEATHFLQALITTDVKKIGLQEIFPGALLSPQGKVLADFLIGKREDGYFIDIFSSLSDLL
YKRLLLYKMRTKVEIMQPLQEFVTVSWENETDSLNFYSSFIDKRFPAKEKIIRIYGETPFLASECHDNWNRLRIRYAIPE
SDKDYEIGKVFPHDINYDQINGLAFNKGCYIGQEVVSRMHHRRAARRRILLVKSQHELIPGANIVAGTKILGSLGTCAAN
EALALMRIDHIKDAMDHNTPFTVKDVPVTISIAENMNFTFPESTV

Sequences:

>Translated_285_residues
MIEKPNAICLKNRKIIKVTGEEATHFLQALITTDVKKIGLQEIFPGALLSPQGKVLADFLIGKREDGYFIDIFSSLSDLL
YKRLLLYKMRTKVEIMQPLQEFVTVSWENETDSLNFYSSFIDKRFPAKEKIIRIYGETPFLASECHDNWNRLRIRYAIPE
SDKDYEIGKVFPHDINYDQINGLAFNKGCYIGQEVVSRMHHRRAARRRILLVKSQHELIPGANIVAGTKILGSLGTCAAN
EALALMRIDHIKDAMDHNTPFTVKDVPVTISIAENMNFTFPESTV
>Mature_285_residues
MIEKPNAICLKNRKIIKVTGEEATHFLQALITTDVKKIGLQEIFPGALLSPQGKVLADFLIGKREDGYFIDIFSSLSDLL
YKRLLLYKMRTKVEIMQPLQEFVTVSWENETDSLNFYSSFIDKRFPAKEKIIRIYGETPFLASECHDNWNRLRIRYAIPE
SDKDYEIGKVFPHDINYDQINGLAFNKGCYIGQEVVSRMHHRRAARRRILLVKSQHELIPGANIVAGTKILGSLGTCAAN
EALALMRIDHIKDAMDHNTPFTVKDVPVTISIAENMNFTFPESTV

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Caenorhabditis elegans, GI71985951, Length=248, Percent_Identity=27.4193548387097, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24645123, Length=272, Percent_Identity=25.3676470588235, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 32508; Mature: 32508

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKPNAICLKNRKIIKVTGEEATHFLQALITTDVKKIGLQEIFPGALLSPQGKVLADFL
CCCCCCEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHH
IGKREDGYFIDIFSSLSDLLYKRLLLYKMRTKVEIMQPLQEFVTVSWENETDSLNFYSSF
HCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHH
IDKRFPAKEKIIRIYGETPFLASECHDNWNRLRIRYAIPESDKDYEIGKVFPHDINYDQI
HHHCCCCHHHEEEEECCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
NGLAFNKGCYIGQEVVSRMHHRRAARRRILLVKSQHELIPGANIVAGTKILGSLGTCAAN
CCEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEHHHHHHHHCCHHHH
EALALMRIDHIKDAMDHNTPFTVKDVPVTISIAENMNFTFPESTV
HHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MIEKPNAICLKNRKIIKVTGEEATHFLQALITTDVKKIGLQEIFPGALLSPQGKVLADFL
CCCCCCEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHH
IGKREDGYFIDIFSSLSDLLYKRLLLYKMRTKVEIMQPLQEFVTVSWENETDSLNFYSSF
HCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHH
IDKRFPAKEKIIRIYGETPFLASECHDNWNRLRIRYAIPESDKDYEIGKVFPHDINYDQI
HHHCCCCHHHEEEEECCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
NGLAFNKGCYIGQEVVSRMHHRRAARRRILLVKSQHELIPGANIVAGTKILGSLGTCAAN
CCEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEHHHHHHHHCCHHHH
EALALMRIDHIKDAMDHNTPFTVKDVPVTISIAENMNFTFPESTV
HHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA