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The map label for this gene is sodB [H]

Identifier: 49475260

GI number: 49475260

Start: 535013

End: 535615

Strand: Reverse

Name: sodB [H]

Synonym: BH04630

Alternate gene names: 49475260

Gene position: 535615-535013 (Counterclockwise)

Preceding gene: 49475261

Following gene: 49475258

Centisome position: 27.74

GC content: 36.48

Gene sequence:

>603_bases
ATGGCTTTTGAACTAGCACCTTTACCTTACGATTATGATAGCCTTTCGCCTTATATGTCACGCGAAACACTTGAATATCA
TCATGATAAGCATCACCTCGCTTATCTGACCAATACTAATAATTTTGTGAAAGATTTAGGCTTAGAAAACGAAAGCCTTG
AAAATATTGTAAAAAAAAGCTTTGGACAGAATATTGGTTTGTTTAATAATGCAGCCCAATACTACAATCATAATCATTTT
TGGCATTGGATGAAAAAAGGAGGGGGGGGTCAAAAACTACCTGAAAAATTAGCAAAAGCTATCGAATCTGATTTGGGTGG
TTATGATAAATTCCGTGCTGATTTTATTGCTACTGCCATTGCACAATTTGGTTCTGGATGGGCATGGATTGCTGTTAAAG
ATGGTAAACTTGAAATTATGAAAACGCCTAATGGTGAAAATCCTCTGGTTCATAATGCGCAACCTATTCTGGGTGTTGAT
GTGTGGGAGCATTCCTACTACATTGACTATCGCAATGTGCGTCCAAAGTATCTTGAAGCCTTTGTCGATCATTTAATTAA
TTGGGACTATGTTTTGAAACTTTATGAAGATTGCGGACTTTAA

Upstream 100 bases:

>100_bases
AAATTAATACAAATAAACTTCAACATTTGATTTTAGGTGCTGTAAATGGCAAATTAGGCTTATCGAGTGAGCTTAACAAT
TAGAATCAAGGAGATTTTAA

Downstream 100 bases:

>100_bases
ATTGTTTGCGTAATTTTTTATGTTGTATTAAAGGCTCCATAATTCATGAGGATATGGAGCCTTCCAAAAAGAAAAGATAT
TCAAGTTAGCAGCATTTTTC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAFELAPLPYDYDSLSPYMSRETLEYHHDKHHLAYLTNTNNFVKDLGLENESLENIVKKSFGQNIGLFNNAAQYYNHNHF
WHWMKKGGGGQKLPEKLAKAIESDLGGYDKFRADFIATAIAQFGSGWAWIAVKDGKLEIMKTPNGENPLVHNAQPILGVD
VWEHSYYIDYRNVRPKYLEAFVDHLINWDYVLKLYEDCGL

Sequences:

>Translated_200_residues
MAFELAPLPYDYDSLSPYMSRETLEYHHDKHHLAYLTNTNNFVKDLGLENESLENIVKKSFGQNIGLFNNAAQYYNHNHF
WHWMKKGGGGQKLPEKLAKAIESDLGGYDKFRADFIATAIAQFGSGWAWIAVKDGKLEIMKTPNGENPLVHNAQPILGVD
VWEHSYYIDYRNVRPKYLEAFVDHLINWDYVLKLYEDCGL
>Mature_199_residues
AFELAPLPYDYDSLSPYMSRETLEYHHDKHHLAYLTNTNNFVKDLGLENESLENIVKKSFGQNIGLFNNAAQYYNHNHFW
HWMKKGGGGQKLPEKLAKAIESDLGGYDKFRADFIATAIAQFGSGWAWIAVKDGKLEIMKTPNGENPLVHNAQPILGVDV
WEHSYYIDYRNVRPKYLEAFVDHLINWDYVLKLYEDCGL

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=37.1859296482412, Blast_Score=132, Evalue=2e-31,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=37.1859296482412, Blast_Score=132, Evalue=2e-31,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=32.3232323232323, Blast_Score=107, Evalue=6e-24,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=49.4845360824742, Blast_Score=193, Evalue=5e-51,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=39.5, Blast_Score=148, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17506561, Length=191, Percent_Identity=37.17277486911, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17569479, Length=195, Percent_Identity=33.8461538461538, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321796, Length=209, Percent_Identity=32.5358851674641, Blast_Score=86, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=35.5329949238579, Blast_Score=121, Evalue=4e-28,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23119; Mature: 22988

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELAPLPYDYDSLSPYMSRETLEYHHDKHHLAYLTNTNNFVKDLGLENESLENIVKKS
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHH
FGQNIGLFNNAAQYYNHNHFWHWMKKGGGGQKLPEKLAKAIESDLGGYDKFRADFIATAI
HCCCCCCCCCHHHHHCCCCEEEHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AQFGSGWAWIAVKDGKLEIMKTPNGENPLVHNAQPILGVDVWEHSYYIDYRNVRPKYLEA
HHHCCCEEEEEEECCEEEEEECCCCCCCCEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDHLINWDYVLKLYEDCGL
HHHHHHCHHHHHHHHHHHCC
>Mature Secondary Structure 
AFELAPLPYDYDSLSPYMSRETLEYHHDKHHLAYLTNTNNFVKDLGLENESLENIVKKS
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHH
FGQNIGLFNNAAQYYNHNHFWHWMKKGGGGQKLPEKLAKAIESDLGGYDKFRADFIATAI
HCCCCCCCCCHHHHHCCCCEEEHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AQFGSGWAWIAVKDGKLEIMKTPNGENPLVHNAQPILGVDVWEHSYYIDYRNVRPKYLEA
HHHCCCEEEEEEECCEEEEEECCCCCCCCEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDHLINWDYVLKLYEDCGL
HHHHHHCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]