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The map label for this gene is ybeY [C]

Identifier: 49475036

GI number: 49475036

Start: 300640

End: 301116

Strand: Reverse

Name: ybeY [C]

Synonym: BH02240

Alternate gene names: 49475036

Gene position: 301116-300640 (Counterclockwise)

Preceding gene: 49475037

Following gene: 49475035

Centisome position: 15.59

GC content: 35.43

Gene sequence:

>477_bases
ATGATTACAATTGATATACTTGTTGAAAGCGATGGGTGGAATGACGAGAAAATGCTTTATAACATCACCGAAAAAGCATT
AAAAACGATAATGCATCATCTTTCATTGGAAAATGTTGTAAGCGAAATCAGCTTGCTTTTTACGGATGACAAACATATGG
CACAAATTAATGCACAATGGCGTGGTAAAAATAAATCCACCAATGTGTTATCTTTTCCTGCTTTTCCCCTTAAAGTTGGA
GATTCTCCTGGACCCATGCTTGGTGATATCATTATTGCACGAGAAACTGTTGTTCTTGAAGCAGAAAATGAAGCAAAATC
ATTTCAGGATCACTTAACGCATATGATTGTCCATGGTATTCTTCATCTGCTTGGCTATAATCATGAAACAAATGAAGAAG
CCTCTCATATGGAAGAGCTCGAAAGAAAAATTCTTCAAAAGCTTTCCATTAAGGATCCTTATGCTGAATTATCTTAA

Upstream 100 bases:

>100_bases
TTGTTGCCGCTATCGTTTGTGCTTATGACCGTGATTCTCGAGCAAAAAACAAAGAAACACCCTCTCATACTTCTCATTAA
AGAAACGAATTTGATTTATT

Downstream 100 bases:

>100_bases
TAAAAATGATAAAAATTAATTTTTAAAATCAATATCACCATCATAAAATTTAAAATACCCTATGCCTTTCTTACAGAAAA
AAGTTTAGAAGATCTCAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MITIDILVESDGWNDEKMLYNITEKALKTIMHHLSLENVVSEISLLFTDDKHMAQINAQWRGKNKSTNVLSFPAFPLKVG
DSPGPMLGDIIIARETVVLEAENEAKSFQDHLTHMIVHGILHLLGYNHETNEEASHMEELERKILQKLSIKDPYAELS

Sequences:

>Translated_158_residues
MITIDILVESDGWNDEKMLYNITEKALKTIMHHLSLENVVSEISLLFTDDKHMAQINAQWRGKNKSTNVLSFPAFPLKVG
DSPGPMLGDIIIARETVVLEAENEAKSFQDHLTHMIVHGILHLLGYNHETNEEASHMEELERKILQKLSIKDPYAELS
>Mature_158_residues
MITIDILVESDGWNDEKMLYNITEKALKTIMHHLSLENVVSEISLLFTDDKHMAQINAQWRGKNKSTNVLSFPAFPLKVG
DSPGPMLGDIIIARETVVLEAENEAKSFQDHLTHMIVHGILHLLGYNHETNEEASHMEELERKILQKLSIKDPYAELS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=117, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1786880, Length=114, Percent_Identity=43.859649122807, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BARHE (Q6G4V8)

Other databases:

- EMBL:   BX897699
- RefSeq:   YP_033077.1
- ProteinModelPortal:   Q6G4V8
- SMR:   Q6G4V8
- GeneID:   2864624
- GenomeReviews:   BX897699_GR
- KEGG:   bhe:BH02240
- NMPDR:   fig|283166.1.peg.205
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- PhylomeDB:   Q6G4V8
- ProtClustDB:   CLSK926972
- BioCyc:   BHEN283166:BH02240-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17960; Mature: 17960

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIDILVESDGWNDEKMLYNITEKALKTIMHHLSLENVVSEISLLFTDDKHMAQINAQW
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHEEEEHEE
RGKNKSTNVLSFPAFPLKVGDSPGPMLGDIIIARETVVLEAENEAKSFQDHLTHMIVHGI
CCCCCCCCEEECCCCEEEECCCCCCHHHHEEEECEEEEEECCHHHHHHHHHHHHHHHHHH
LHLLGYNHETNEEASHMEELERKILQKLSIKDPYAELS
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MITIDILVESDGWNDEKMLYNITEKALKTIMHHLSLENVVSEISLLFTDDKHMAQINAQW
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHEEEEHEE
RGKNKSTNVLSFPAFPLKVGDSPGPMLGDIIIARETVVLEAENEAKSFQDHLTHMIVHGI
CCCCCCCCEEECCCCEEEECCCCCCHHHHEEEECEEEEEECCHHHHHHHHHHHHHHHHHH
LHLLGYNHETNEEASHMEELERKILQKLSIKDPYAELS
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA